RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 CAPN1P07384 714 aa16.19■□□□□ 0.18
CUX1-213ENST00000549414 ACBD5Q5T8D3 534 aaPredicted RBP16.19■□□□□ 0.18
CUX1-213ENST00000549414 CPSF7Q8N684 471 aaKnown RBP16.19■□□□□ 0.18
CUX1-213ENST00000549414 SLC39A3Q9BRY0 314 aa16.19■□□□□ 0.18
CUX1-213ENST00000549414 MFSD1Q9H3U5 465 aa16.19■□□□□ 0.18
CUX1-213ENST00000549414 GEMIN8Q9NWZ8 242 aaKnown RBP16.19■□□□□ 0.18
CUX1-213ENST00000549414 TMCC3Q9ULS5 477 aa16.19■□□□□ 0.18
CUX1-213ENST00000549414 GSTM1P09488 218 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 GRK3P35626 688 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 CSTF3Q12996 717 aaKnown RBP16.18■□□□□ 0.18
CUX1-213ENST00000549414 KIAA1324Q6UXG2 1013 aaKnown RBP16.18■□□□□ 0.18
CUX1-213ENST00000549414 DNAJB7Q7Z6W7 309 aaPredicted RBP16.18■□□□□ 0.18
CUX1-213ENST00000549414 TREML1Q86YW5 311 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 CDK15Q96Q40 435 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 FLRT1Q9NZU1 646 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 A8MT66 165 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 ITGB1P05556 798 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 PFKMP08237 780 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 MAPK9P45984 424 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 UBE3AQ05086 875 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 MARCH8Q5T0T0 291 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 ZNF490Q9ULM2 529 aaPredicted RBP16.18■□□□□ 0.18
CUX1-213ENST00000549414 CRATP43155 626 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 C6orf52Q5T4I8 152 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 MBLAC2Q68D91 279 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 APLFQ8IW19 511 aaPredicted RBP16.18■□□□□ 0.18
CUX1-213ENST00000549414 ST13P5Q8NFI4 369 aaPredicted RBP16.18■□□□□ 0.18
CUX1-213ENST00000549414 GPR22Q99680 433 aa16.18■□□□□ 0.18
CUX1-213ENST00000549414 ARIH1Q9Y4X5 557 aaPredicted RBP16.18■□□□□ 0.18
CUX1-213ENST00000549414 A0A0D9SEW6 157 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 ARVCFO00192 962 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 HNRNPRO43390 633 aaKnown RBP16.17■□□□□ 0.18
CUX1-213ENST00000549414 ELFN1P0C7U0 828 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 HAPLN1P10915 354 aaPredicted RBP16.17■□□□□ 0.18
CUX1-213ENST00000549414 DGCR6Q14129 220 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 REP15Q6BDI9 236 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 PRR23CQ6ZRP0 262 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 GPR180Q86V85 440 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 TSPAN14Q8NG11 270 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 SMG7Q92540 1137 aaKnown RBP16.17■□□□□ 0.18
CUX1-213ENST00000549414 A0A1W2PRU2 124 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 LAG3P18627 525 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 GSTT1P30711 240 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 MPPE1Q53F39 396 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 RNF19BQ6ZMZ0 732 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 FAM47BQ8NA70 645 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 PNPT1Q8TCS8 783 aaKnown RBP16.17■□□□□ 0.18
CUX1-213ENST00000549414 MAGEC3Q8TD91 643 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 ACTRT2Q8TDY3 377 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 PANX1Q96RD7 426 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 TMLHEQ9NVH6 421 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 STRCQ7RTU9 1775 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 UQCRBP14927 111 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 CSKP41240 450 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 SLC16A1P53985 500 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 NUP107P57740 925 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 BNIPLQ7Z465 357 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 CLDN19Q8N6F1 224 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 FLCNQ8NFG4 579 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 OR9I1Q8NGQ6 314 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 DENND1AQ8TEH3 1009 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 PAWRQ96IZ0 340 aaKnown RBP16.17■□□□□ 0.18
CUX1-213ENST00000549414 GPR62Q9BZJ7 368 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 GIMAP2Q9UG22 337 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 MTMR11A4FU01 709 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 DCLK1O15075 740 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 STK16O75716 305 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 NCK1P16333 377 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 AQP1P29972 269 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 PRKAG1P54619 331 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 CNTD1Q8N815 330 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 SLC2A13Q96QE2 648 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 SIRPGQ9P1W8 387 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 PPM1HQ9ULR3 514 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 SCML2Q9UQR0 700 aa16.17■□□□□ 0.18
CUX1-213ENST00000549414 C8AP07357 584 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 POLD2P49005 469 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 THOP1P52888 689 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 CACNG1Q06432 222 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 MOGSQ13724 837 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 ADGRF1Q5T601 910 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 EMC10Q5UCC4 262 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 ZCCHC8Q6NZY4 707 aaKnown RBP16.16■□□□□ 0.18
CUX1-213ENST00000549414 FEM1CQ96JP0 617 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 GNEQ9Y223 722 aaKnown RBP16.16■□□□□ 0.18
CUX1-213ENST00000549414 YIPF1Q9Y548 306 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 SNUPNO95149 360 aaKnown RBP16.16■□□□□ 0.18
CUX1-213ENST00000549414 XRCC1P18887 633 aaPredicted RBP16.16■□□□□ 0.18
CUX1-213ENST00000549414 EFNA1P20827 205 aaPredicted RBP16.16■□□□□ 0.18
CUX1-213ENST00000549414 FGD3Q5JSP0 725 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 TRNP1Q6NT89 227 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 PATL1Q86TB9 770 aaKnown RBP16.16■□□□□ 0.18
CUX1-213ENST00000549414 TCF12Q99081 682 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 PTPN18Q99952 460 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 LINC00854A0A1B0GVQ3 168 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 DPPA5A6NC42 116 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 KLF11O14901 512 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 NBNO60934 754 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 S100A5P33763 92 aa16.16■□□□□ 0.18
CUX1-213ENST00000549414 SPAM1P38567 509 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms