RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 TEX15Q9BXT5 2789 aa12.73□□□□□ -0.37
PTCH1-218ENST00000548945 MN1Q10571 1320 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-218ENST00000548945 TRBV23OR9-2A0A075B6M9 112 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 C1orf232A0A0U1RR37 186 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 LILRA5A6NI73 299 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 CYSRT1A8MQ03 144 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 GPR89AB7ZAQ6 455 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 NUAK1O60285 661 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 ATP1A1P05023 1023 aaKnown RBP12.72□□□□□ -0.37
PTCH1-218ENST00000548945 CD48P09326 243 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 ANKRD34CP0C6C1 535 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 GPR89BP0CG08 455 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 PPM1FP49593 454 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-218ENST00000548945 MAP7Q14244 749 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 PDK2Q15119 407 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 ANKRD20A8PQ5CZ79 823 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 CHST15Q7LFX5 561 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-218ENST00000548945 PLXDC1Q8IUK5 500 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 MAP7D3Q8IWC1 876 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 CCHCR1Q8TD31 782 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 NCSTNQ92542 709 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 IQCDQ96DY2 449 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 BTBD6Q96KE9 485 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 CARD9Q9H257 536 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 PKD2L2Q9NZM6 624 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 ANAPC2Q9UJX6 822 aa12.72□□□□□ -0.37
PTCH1-218ENST00000548945 PCYT1BQ9Y5K3 369 aaPredicted RBP12.72□□□□□ -0.37
PTCH1-218ENST00000548945 A8MU76 341 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 FADS2P1A8MWK0 482 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 ANKRD66B4E2M5 251 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 GRID2O43424 1007 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 STK17BO94768 372 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 SERPING1P05155 500 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 HLA-DQB2P05538 268 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 ACP5P13686 325 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 CASRP41180 1078 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 NOP2P46087 812 aaKnown RBP12.71□□□□□ -0.37
PTCH1-218ENST00000548945 NIPAL4Q0D2K0 466 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 CDC20Q12834 499 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 NFATC2Q13469 925 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 SNAP47Q5SQN1 464 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 PDPK2PQ6A1A2 396 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 TIPARPQ7Z3E1 657 aaKnown RBP12.71□□□□□ -0.37
PTCH1-218ENST00000548945 PHYKPLQ8IUZ5 450 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 KCTD6Q8NC69 237 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 LPCAT1Q8NF37 534 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 FAF2Q96CS3 445 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 HDAC11Q96DB2 347 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 MLPHQ9BV36 600 aaPredicted RBP12.71□□□□□ -0.37
PTCH1-218ENST00000548945 ADGRE3Q9BY15 652 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 NFKBIL1Q9UBC1 381 aaPredicted RBP12.71□□□□□ -0.37
PTCH1-218ENST00000548945 CPNE7Q9UBL6 633 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 LCMT1Q9UIC8 334 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 KCNK6Q9Y257 313 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 TTLL3Q9Y4R7 772 aa12.71□□□□□ -0.37
PTCH1-218ENST00000548945 LOC101059948A0A1B0GTJ6 334 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 POLR1CO15160 346 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 TOX3O15405 576 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 NKX2-8O15522 239 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 DLGAP3O95886 979 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 SERPINC1P01008 464 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 C9P02748 559 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 MMP2P08253 660 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 KRT7P08729 469 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 XRCC1P18887 633 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 STAT5AP42229 794 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 SSR1P43307 286 aaKnown RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 DCDC1P59894 354 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 UBE2IP63279 158 aaKnown RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 ZBED6P86452 979 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 SRSF1Q07955 248 aaKnown RBP eCLIP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 QPCTQ16769 361 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 COLEC12Q5KU26 742 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 ALKBH5Q6P6C2 394 aaKnown RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 PTRH1Q86Y79 214 aaKnown RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 ESX1Q8N693 406 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 C9orf43Q8TAL5 461 aaPredicted RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 APOBEC4Q8WW27 367 aaKnown RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 CTRCQ99895 268 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 ZSCAN5AQ9BUG6 496 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 EPN3Q9H201 632 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 RAD18Q9NS91 495 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 SIDT1Q9NXL6 827 aaKnown RBP12.7□□□□□ -0.38
PTCH1-218ENST00000548945 PRKAB1Q9Y478 270 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 ADGRG1Q9Y653 693 aa12.7□□□□□ -0.38
PTCH1-218ENST00000548945 SPENQ96T58 3664 aaKnown RBP12.69□□□□□ -0.38
PTCH1-218ENST00000548945 A0A087X0T9 212 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 SNX2O60749 519 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 FAM228BP0C875 321 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 PBX1P40424 430 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 CD86P42081 329 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 IFI35P80217 286 aaPredicted RBP12.69□□□□□ -0.38
PTCH1-218ENST00000548945 IQCB1Q15051 598 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 ATP13A4Q4VNC1 1196 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF569Q5MCW4 686 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 KDELC2Q7Z4H8 507 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 CCDC13Q8IYE1 715 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 PQLC3Q8N755 202 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 STARD8Q92502 1023 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms