RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RHOBTB2Q9BYZ6 727 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ZNF518BQ9C0D4 1074 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 HAPLN2Q9GZV7 340 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ABCG8Q9H221 673 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ACAD9Q9H845 621 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 PLAC1Q9HBJ0 212 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 APOBEC3GQ9HC16 384 aaKnown RBP5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ITM2CQ9NQX7 267 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 SATB2Q9UPW6 733 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 ST14Q9Y5Y6 855 aa5.46□□□□□ -1.53
LIMA1-203ENST00000547825 MYO18AQ92614 2054 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CHADO15335 359 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 RNGTTO60942 597 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 NDUFS3O75489 264 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 RHOBTB1O94844 696 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 METTL18O95568 372 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ICAM1P05362 532 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SNRPB2P08579 225 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ITGAXP20702 1163 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CNTFP26441 200 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 TUFMP49411 452 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CCNG1P51959 295 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 HADHBP55084 474 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SNRPFP62306 86 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 POU4F1Q01851 419 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 GK3PQ14409 553 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PFKFB4Q16877 469 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 VPS26BQ4G0F5 336 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ARMC4Q5T2S8 1044 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ABRAXAS1Q6UWZ7 409 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 RPS27LQ71UM5 84 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 LRRC8DQ7L1W4 858 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PHF13Q86YI8 300 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 TDRPQ86YL5 185 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SFRP1Q8N474 314 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SAMD3Q8N6K7 520 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 RP9Q8TA86 221 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CALML6Q8TD86 181 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 UTP15Q8TED0 518 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 BDH2Q9BUT1 245 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 C9orf16Q9BUW7 83 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 C1orf50Q9BV19 199 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CHID1Q9BWS9 393 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 KCNK13Q9HB14 408 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SPAG4Q9NPE6 437 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SEMA4BQ9NPR2 832 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 HOXC10Q9NYD6 342 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ITGA11Q9UKX5 1188 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PCDHGB4Q9UN71 923 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PCDHGB5Q9Y5G0 923 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 DENND4AQ7Z401 1863 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 A0A0C4DFX4 3053 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 A0A0J9YVX5 310 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PCP4L1A6NKN8 68 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CCL22O00626 93 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 H6PDO95479 791 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SLC25A27O95847 323 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PIRTP0C851 137 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 VDRP11473 427 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ADH5P11766 374 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 NID1P14543 1247 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PGAM1P18669 254 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 KLRC2P26717 231 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CRHR1P34998 444 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ATP6V1E1P36543 226 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 BCAT1P54687 386 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 STILQ15468 1287 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CCL14Q16627 93 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 RAB6CQ53S08 254 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 EXOSC6Q5RKV6 272 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CRTC3Q6UUV7 619 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 FAM183BPQ6ZVS7 135 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 USP53Q70EK8 1073 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 LDB1Q86U70 411 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SLCO6A1Q86UG4 719 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SLC44A2Q8IWA5 706 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 FAM126BQ8IXS8 530 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 DEFB106AQ8N104 65 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 UBE2J2Q8N2K1 259 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PLD5Q8N7P1 536 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 FNDC5Q8NAU1 212 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 GALNT6Q8NCL4 622 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CANT1Q8WVQ1 401 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 DLG3Q92796 817 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 TAMM41Q96BW9 452 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 BTBD9Q96Q07 612 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 SLC25A23Q9BV35 468 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 TMPRSS13Q9BYE2 586 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 RAB6CQ9H0N0 254 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 C2orf40Q9H1Z8 148 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 EPB41L1Q9H4G0 881 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PRDM16Q9HAZ2 1276 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 FANCEQ9HB96 536 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 ARNT2Q9HBZ2 717 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 CHRAC1Q9NRG0 131 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PIN4Q9Y237 131 aaKnown RBP5.46□□□□□ -1.54
LIMA1-203ENST00000547825 FAM50BQ9Y247 325 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 PLXNA4Q9HCM2 1894 aa5.46□□□□□ -1.54
LIMA1-203ENST00000547825 MATN2O00339 956 aa5.45□□□□□ -1.54
LIMA1-203ENST00000547825 CNOT3O75175 753 aaKnown RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms