RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NFASCO94856 1347 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 C17orf102A2RUQ5 167 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 SAGE2PA6NJ88 616 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 VPS26AO75436 327 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 RGS20O76081 388 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 EGFRP00533 1210 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 SLC2A3P11169 496 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 RNF111Q6ZNA4 994 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 ANKRD13BQ86YJ7 626 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 RAB42Q8N4Z0 105 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 OR56A4Q8NGH8 313 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 OR10A6Q8NH74 314 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 LHPPQ9H008 270 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 MROH8Q9H579 483 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 TBC1D30Q9Y2I9 924 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 DOT1LQ8TEK3 1739 aa14.16□□□□□ -0.14
LIMS1-215ENST00000544547 BTN3A3O00478 584 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 SDHDO14521 159 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 F9P00740 461 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 L1CAMP32004 1257 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CXCR3P49682 368 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 POLR2JP52435 117 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 FBXO47Q5MNV8 452 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ANKRD26P1Q6NSI1 321 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 PKN3Q6P5Z2 889 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CNSTQ6PJW8 725 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 PROSER1Q86XN7 944 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 TBC1D15Q8TC07 691 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 OTUB1Q96FW1 271 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF597Q96LX8 424 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 HDHD2Q9H0R4 259 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ABCB9Q9NP78 766 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 OGDHLQ9ULD0 1010 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 GPR25O00155 361 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CLDN5O00501 218 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 TSPAN4O14817 238 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 MDM4O15151 490 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 FARP2O94887 1054 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 AHSGP02765 367 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ODC1P11926 461 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ASPAP45381 313 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 RPL38P63173 70 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CD83Q01151 205 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 IL18R1Q13478 541 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ATAD3BQ5T9A4 648 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 NANOGP8Q6NSW7 305 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF544Q6NX49 715 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CATSPERGQ6ZRH7 1159 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 KIAA0408Q6ZU52 694 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 LRRC49Q8IUZ0 686 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 SCML4Q8N228 414 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 RBM4BQ9BQ04 359 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 RBM4Q9BWF3 364 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 PRKD2Q9BZL6 878 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ASB7Q9H672 318 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 SIAEQ9HAT2 523 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 MOCS1Q9NZB8 636 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 EMCNQ9ULC0 261 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 SLC22A1O15245 554 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ZW10O43264 779 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 NTRK1P04629 796 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CHRM5P08912 532 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 TGFB3P10600 412 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CMTR2Q8IYT2 770 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 TOP1MTQ969P6 601 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 TMEM246Q9BRR3 403 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 COPS4Q9BT78 406 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 KRT84Q9NSB2 600 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 INTS10Q9NVR2 710 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 GMPR2Q9P2T1 348 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 CRLS1Q9UJA2 301 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 PRR23D1E9PI22 279 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 PRR23D2P0DMB1 279 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 NOS2P35228 1153 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ALDH7A1P49419 539 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 PPP2R2DQ66LE6 453 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 LCLAT1Q6UWP7 414 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ZNF621Q6ZSS3 439 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 RNF180Q86T96 592 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 MINDY2Q8NBR6 621 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 HSFY1Q96LI6 401 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 FCRL3Q96P31 734 aaPredicted RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 WDR83Q9BRX9 315 aaKnown RBP14.15□□□□□ -0.14
LIMS1-215ENST00000544547 C8orf4Q9NR00 106 aa14.15□□□□□ -0.14
LIMS1-215ENST00000544547 ADAMTSL3P82987 1691 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 PRSS51A0A1B0GVH4 220 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 C5orf58C9J3I9 102 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 FYNP06241 537 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 GGT5P36269 586 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 QPRTQ15274 297 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 PSMD5Q16401 504 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 SPDYE7PQ495Y7 208 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 ATP6V0D2Q8N8Y2 350 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 GFM1Q96RP9 751 aaKnown RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 TP63Q9H3D4 680 aaPredicted RBP14.14□□□□□ -0.15
LIMS1-215ENST00000544547 TAS2R13Q9NYV9 303 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 ACTR3BQ9P1U1 418 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 CYTH4Q9UIA0 394 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 CPQQ9Y646 472 aa14.14□□□□□ -0.15
LIMS1-215ENST00000544547 PTPN3P26045 913 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms