RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 C9orf43Q8TAL5 461 aaPredicted RBP15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 TRIM11Q96F44 468 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 ABHD17AQ96GS6 310 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 LYSMD1Q96S90 227 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 PCDH9Q9HC56 1237 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 FBXO8Q9NRD0 319 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 VPS18Q9P253 973 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 CPNE7Q9UBL6 633 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 SLC23A2Q9UGH3 650 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 TUBD1Q9UJT1 453 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 PLAAQ9Y263 795 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 SLC30A1Q9Y6M5 507 aa15.29■□□□□ 0.04
CLSTN3-213ENST00000541953 A0A087X0T9 212 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 MATN3O15232 486 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 PIRTP0C851 137 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 FAM228BP0C875 321 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 F3P13726 295 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 ZNF8P17098 575 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 STAT5AP42229 794 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 ZBTB17Q13105 803 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 PEX6Q13608 980 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 PIGHQ14442 188 aaPredicted RBP15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 KHDC1Q4VXA5 237 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 ALS2CLQ60I27 953 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 C16orf46Q6P387 395 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 CEACAM20Q6UY09 585 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 TMEM135Q86UB9 458 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 PLEKHG4BQ96PX9 1271 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 TEFMQ96QE5 360 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 CEP41Q9BYV8 373 aa15.28■□□□□ 0.04
CLSTN3-213ENST00000541953 NUAK1O60285 661 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 CYP1A2P05177 515 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 TYRP1P17643 537 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 MAP4P27816 1152 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 CD86P42081 329 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 LEPRP48357 1165 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 ZNF165P49910 485 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 ABHD18Q0P651 414 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 UBAP2LQ14157 1087 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 TDRD12Q587J7 1177 aaKnown RBP15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 ANKRD20A8PQ5CZ79 823 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 CCDC183Q5T5S1 534 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 CRTC3Q6UUV7 619 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 CNTD1Q8N815 330 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 GPR26Q8NDV2 337 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 CATSPER2Q96P56 530 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 OR2AG1Q9H205 316 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 ZNF624Q9P2J8 865 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 RCOR3Q9P2K3 495 aaPredicted RBP15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 TP53TG5Q9Y2B4 290 aa15.27■□□□□ 0.04
CLSTN3-213ENST00000541953 SPTAN1Q13813 2472 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 TNRC6AQ8NDV7 1962 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 PRR19A6NJB7 356 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 KCNK1O00180 336 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 POLR1CO15160 346 aaPredicted RBP15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 GRID2O43424 1007 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 KIF1CO43896 1103 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 MTX2O75431 263 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 C9P02748 559 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 PYGLP06737 847 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 SSR1P43307 286 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 SEPHS1P49903 392 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 EPHA4P54764 986 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 PPP1CAP62136 330 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 NR1I3Q14994 352 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 SEPT7Q16181 437 aaKnown RBP15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 KDELC2Q7Z4H8 507 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 SLC9B2Q86UD5 537 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 RSC1A1Q92681 617 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 FAF2Q96CS3 445 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 ELMO2Q96JJ3 720 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 TSGA13Q96PP4 275 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 TRIB3Q96RU7 358 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 HERPUD2Q9BSE4 406 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 OSGEPL1Q9H4B0 414 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 FAM83DQ9H4H8 585 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 KLC4Q9NSK0 619 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 IP6K2Q9UHH9 426 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 TMPRSS11EQ9UL52 423 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 NENFQ9UMX5 172 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 RPS6KL1Q9Y6S9 549 aa15.26■□□□□ 0.03
CLSTN3-213ENST00000541953 LILRA5A6NI73 299 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 TIAF1O95411 115 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 SLC4A1P02730 911 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 PDGFAP04085 211 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 BRAFP15056 766 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 CCNCP24863 283 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 PBX1P40424 430 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 SLC19A1P41440 591 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 FOXM1Q08050 763 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 IFI16Q16666 785 aaKnown RBP15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 B4GALNT4Q76KP1 1039 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 ADGRG6Q86SQ4 1221 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 ZNF547Q8IVP9 402 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 NDUFAF2Q8N183 169 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 GALNT6Q8NCL4 622 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 KIAA1143Q96AT1 154 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 C9orf72Q96LT7 481 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 TGM7Q96PF1 710 aa15.25■□□□□ 0.03
CLSTN3-213ENST00000541953 RUFY1Q96T51 708 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms