RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 RAD1O60671 282 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 ACP5P13686 325 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 F3P13726 295 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 SLC2A4P14672 509 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CD86P42081 329 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CLCNKAP51800 687 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 IFI35P80217 286 aaPredicted RBP11.23□□□□□ -0.61
VPS28-214ENST00000531032 MC2RQ01718 297 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 PPIDQ08752 370 aaKnown RBP11.23□□□□□ -0.61
VPS28-214ENST00000531032 NFATC2Q13469 925 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 KIR2DS5Q14953 304 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 SKOR2Q2VWA4 1001 aaPredicted RBP11.23□□□□□ -0.61
VPS28-214ENST00000531032 BORAQ6PGQ7 559 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 LYSMD3Q7Z3D4 306 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 SLC9B2Q86UD5 537 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CNTD1Q8N815 330 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 AVL9Q8NBF6 648 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CCNYQ8ND76 341 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CCHCR1Q8TD31 782 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CPLX3Q8WVH0 158 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 EID2BQ96D98 161 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 MLPHQ9BV36 600 aaPredicted RBP11.23□□□□□ -0.61
VPS28-214ENST00000531032 ADGRE3Q9BY15 652 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CARD9Q9H257 536 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 EPB41L1Q9H4G0 881 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 FBXO8Q9NRD0 319 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 CTTNBP2NLQ9P2B4 639 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 LCMT1Q9UIC8 334 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 LUC7L2Q9Y383 392 aaKnown RBP11.23□□□□□ -0.61
VPS28-214ENST00000531032 ADGRG1Q9Y653 693 aa11.23□□□□□ -0.61
VPS28-214ENST00000531032 LILRA5A6NI73 299 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 OR5K4A6NMS3 321 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 ZNF891A8MT65 544 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 A8MU76 341 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 ZNF487B1APH4 448 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 GPR89AB7ZAQ6 455 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 KCNK1O00180 336 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 CAPN5O15484 640 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 GRID2O43424 1007 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 JCHAINP01591 159 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 H2AFZP0C0S5 128 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 GPR89BP0CG08 455 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 HNRNPH3P31942 346 aaKnown RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 MAN1A1P33908 653 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 POLE2P56282 527 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 DCDC1P59894 354 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 MN1Q10571 1320 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 ZBTB17Q13105 803 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 SNAP47Q5SQN1 464 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 CEACAM20Q6UY09 585 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 H2AFVQ71UI9 128 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 VSIG1Q86XK7 387 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 PHYKPLQ8IUZ5 450 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 NLGN4XQ8N0W4 816 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 PLD5Q8N7P1 536 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 NLGN4YQ8NFZ3 816 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 CTNNBL1Q8WYA6 563 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 NCSTNQ92542 709 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 RAPGEF5Q92565 580 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 COL26A1Q96A83 441 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 SLC45A3Q96JT2 553 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 ZNF830Q96NB3 372 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 CATSPER2Q96P56 530 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 RNF157Q96PX1 679 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 TRIB3Q96RU7 358 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 ZPBPQ9BS86 351 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 UCK1Q9HA47 277 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 ATXN10Q9UBB4 475 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 NFKBIL1Q9UBC1 381 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 CPNE7Q9UBL6 633 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 TUBD1Q9UJT1 453 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 TMEM184BQ9Y519 407 aaPredicted RBP11.22□□□□□ -0.61
VPS28-214ENST00000531032 HECTD1Q9ULT8 2610 aa11.22□□□□□ -0.61
VPS28-214ENST00000531032 CHUKO15111 745 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 SNX2O60749 519 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 ANKRD34CP0C6C1 535 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 ZNF8P17098 575 aaPredicted RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 KDELR1P24390 212 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 MAP4P27816 1152 aaKnown RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 CASP14P31944 242 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 PPM1FP49593 454 aaPredicted RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 UBE2IP63279 158 aaKnown RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 KCNAB2Q13303 367 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 GALNT3Q14435 633 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 SLC18A3Q16572 532 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 ZNF569Q5MCW4 686 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 PDPK2PQ6A1A2 396 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 SLC9A4Q6AI14 798 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 TIPARPQ7Z3E1 657 aaKnown RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 GPR26Q8NDV2 337 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 KIAA1143Q96AT1 154 aaPredicted RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 TADA1Q96BN2 335 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 IMP4Q96G21 291 aaKnown RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 CTRCQ99895 268 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 ZSCAN5AQ9BUG6 496 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 PACSIN1Q9BY11 444 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 GPN2Q9H9Y4 310 aaPredicted RBP11.21□□□□□ -0.61
VPS28-214ENST00000531032 ZFYVE1Q9HBF4 777 aa11.21□□□□□ -0.61
VPS28-214ENST00000531032 MAGEE1Q9HCI5 957 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms