RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 KCTD11Q693B1 232 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 RBM44Q6ZP01 1051 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 BZW1Q7L1Q6 419 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 C11orf96Q7Z7L8 435 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 ZNF761Q86XN6 746 aaPredicted RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 TRAM1L1Q8N609 369 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 IPMKQ8NFU5 416 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 NAT14Q8WUY8 206 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 HNRNPLLQ8WVV9 542 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 CALR3Q96L12 384 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 SLC46A1Q96NT5 459 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 VAT1Q99536 393 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 APOL2Q9BQE5 337 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 ABCG4Q9H172 646 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 SEMA6CQ9H3T2 930 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 LUC7LQ9NQ29 371 aaKnown RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 PKD2L2Q9NZM6 624 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 SCHIP1Q9P0W5 487 aaPredicted RBP10.55□□□□□ -0.72
CD44-227ENST00000528086 LRIT1Q9P2V4 623 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 TRHDEQ9UKU6 1024 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 AMFRQ9UKV5 643 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 DNPEPQ9ULA0 475 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 DOLKQ9UPQ8 538 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 SSUH2Q9Y2M2 353 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.55□□□□□ -0.72
CD44-227ENST00000528086 AK5Q9Y6K8 562 aa10.55□□□□□ -0.72
CD44-227ENST00000528086 PIKFYVEQ9Y2I7 2098 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 TRBV23OR9-2A0A075B6M9 112 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 PRAMEF33A0A0G2JMD5 474 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 KCNN4O15554 427 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 MTSS1O43312 755 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 SGTAO43765 313 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A9O60656 530 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 METTL18O95568 372 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 PNLIPP16233 465 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A6P19224 532 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A1P22309 533 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A4P22310 534 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A3P35503 534 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A5P35504 534 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 ETV5P41161 510 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 ACTR1BP42025 376 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 ARSDP51689 593 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 NAP1L1P55209 391 aaKnown RBP10.54□□□□□ -0.72
CD44-227ENST00000528086 ACTR1AP61163 376 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 KIF5AQ12840 1032 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 ILF3Q12906 894 aaKnown RBP eCLIP10.54□□□□□ -0.72
CD44-227ENST00000528086 MPP3Q13368 585 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 SPARCL1Q14515 664 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 CHRNA6Q15825 494 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 SDK2Q58EX2 2172 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 ODF2Q5BJF6 829 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 C3orf38Q5JPI3 329 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.54□□□□□ -0.72
CD44-227ENST00000528086 NKAIN2Q5VXU1 208 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 IGF2-ASQ6U949 168 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 PEX26Q7Z412 305 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 PRUNE1Q86TP1 453 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 SFRP1Q8N474 314 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 SLC37A2Q8TED4 501 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 SCG3Q8WXD2 468 aaKnown RBP10.54□□□□□ -0.72
CD44-227ENST00000528086 ATG4AQ8WYN0 398 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 GLMNQ92990 594 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 GLYATL1Q969I3 302 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 SPATA13Q96N96 652 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 BBC3Q96PG8 261 aaPredicted RBP10.54□□□□□ -0.72
CD44-227ENST00000528086 NUDT22Q9BRQ3 303 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 FICDQ9BVA6 458 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 GSDMCQ9BYG8 508 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 GPR63Q9BZJ6 419 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 OR2AG1Q9H205 316 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 POLR1BQ9H9Y6 1135 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A7Q9HAW7 530 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A10Q9HAW8 530 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 UGT1A8Q9HAW9 530 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 RDH14Q9HBH5 336 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 TRIM39Q9HCM9 518 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 TMEM9Q9P0T7 183 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 RSPH14Q9UHP6 348 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 KCNK6Q9Y257 313 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 ARL5AQ9Y689 179 aa10.54□□□□□ -0.72
CD44-227ENST00000528086 C5orf60A6NFR6 353 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 GRID2O43424 1007 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 ASMTLO95671 621 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 PYGLP06737 847 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 ACP5P13686 325 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 BRAFP15056 766 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 CCKBRP32239 447 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 CTSCP53634 463 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 XIAPP98170 497 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 SPIDRQ14159 915 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 C16orf72Q14CZ0 275 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 OASLQ15646 514 aaKnown RBP10.53□□□□□ -0.72
CD44-227ENST00000528086 IYDQ6PHW0 289 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 DARS2Q6PI48 645 aaKnown RBP10.53□□□□□ -0.72
CD44-227ENST00000528086 USP53Q70EK8 1073 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 CHST15Q7LFX5 561 aaPredicted RBP10.53□□□□□ -0.72
CD44-227ENST00000528086 GALNT13Q8IUC8 556 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 FAM71DQ8N9W8 422 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 GLIS1Q8NBF1 620 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms