RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CCDC74AQ96AQ1 378 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 NUS1Q96E22 293 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 CAPZA3Q96KX2 299 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 FICDQ9BVA6 458 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 AP1M1Q9BXS5 423 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 LRRC40Q9H9A6 602 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 SMARCAL1Q9NZC9 954 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 HACD3Q9P035 362 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 GULP1Q9UBP9 304 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 RNF14Q9UBS8 474 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 KLQ9UEF7 1012 aa10.09□□□□□ -0.79
VPS28-204ENST00000526054 ERI2A8K979 691 aaKnown RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 D6RAR5 112 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 E7EVH7 732 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 CASC3O15234 703 aaKnown RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 TNFSF15O95150 251 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 METTL18O95568 372 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 TUBB4AP04350 444 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 ITGA2BP08514 1039 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 KCNJ1P48048 391 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 LMAN1P49257 510 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 FNTAP49354 379 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 STC1P52823 247 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 SRP54P61011 504 aaKnown RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 MTM1Q13496 603 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 INPP5AQ14642 412 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 SLC1A5Q15758 541 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 CYP1B1Q16678 543 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 WSCD2Q2TBF2 565 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 SIRPB2Q5JXA9 342 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 LVRNQ6Q4G3 990 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 ENPP7Q6UWV6 458 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 SYT10Q6XYQ8 523 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 HSD11B1LQ7Z5J1 315 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 CLEC14AQ86T13 490 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 GKN2Q86XP6 184 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 KLHDC8BQ8IXV7 354 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 SLC25A41Q8N5S1 370 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 GRK7Q8WTQ7 553 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 TSACCQ96A04 125 aaPredicted RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 DTD2Q96FN9 168 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 PDXPQ96GD0 296 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 LIN37Q96GY3 246 aaPredicted RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 PRR11Q96HE9 360 aaPredicted RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 C16orf45Q96MC5 204 aaPredicted RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 COQ10AQ96MF6 247 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 WDR92Q96MX6 357 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 SMIM14Q96QK8 99 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 GFM1Q96RP9 751 aaKnown RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 TBL1YQ9BQ87 522 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 GORASP1Q9BQQ3 440 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 APOOQ9BUR5 198 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 GPR63Q9BZJ6 419 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 TRABDQ9H4I3 376 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 ZFYVE1Q9HBF4 777 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 MAGEE1Q9HCI5 957 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 EPB41L5Q9HCM4 733 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 PKD2L2Q9NZM6 624 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 FEZ2Q9UHY8 353 aaPredicted RBP10.08□□□□□ -0.8
VPS28-204ENST00000526054 GPR34Q9UPC5 381 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 ZNF711Q9Y462 761 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 OR1A2Q9Y585 309 aa10.08□□□□□ -0.8
VPS28-204ENST00000526054 RGSL1A5PLK6 1076 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 NTN3O00634 580 aaPredicted RBP10.07□□□□□ -0.8
VPS28-204ENST00000526054 PLD2O14939 933 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 CLDN7O95471 211 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 AP2A1O95782 977 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 GAS8O95995 478 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 AGTP01019 485 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 SLC4A1P02730 911 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 RPLP0P05388 317 aaKnown RBP10.07□□□□□ -0.8
VPS28-204ENST00000526054 PYGLP06737 847 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 PIRTP0C851 137 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 ETS1P14921 441 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 GM2AP17900 193 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 ADRA1AP35348 466 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 COILP38432 576 aaPredicted RBP10.07□□□□□ -0.8
VPS28-204ENST00000526054 ETV3P41162 512 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 CHRNA4P43681 627 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 EIF3IQ13347 325 aaKnown RBP10.07□□□□□ -0.8
VPS28-204ENST00000526054 CCDC137Q6PK04 289 aaKnown RBP10.07□□□□□ -0.8
VPS28-204ENST00000526054 CCDC81Q6ZN84 652 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 NYAP1Q6ZVC0 841 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 LYSMD3Q7Z3D4 306 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 B3GNT8Q7Z7M8 397 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 LINC00523Q86TU6 105 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 NRSN1Q8IZ57 195 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 SDR16C5Q8N3Y7 309 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 TAB3Q8N5C8 712 aaPredicted RBP10.07□□□□□ -0.8
VPS28-204ENST00000526054 BLOC1S5Q8TDH9 187 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 SNRNP27Q8WVK2 155 aaKnown RBP10.07□□□□□ -0.8
VPS28-204ENST00000526054 TTC9Q92623 222 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 WBP1Q96G27 269 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 RUNDC3BQ96NL0 473 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 STRADBQ9C0K7 418 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 ETNK1Q9HBU6 452 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 RAB6BQ9NRW1 208 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 RAD18Q9NS91 495 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 WDR70Q9NW82 654 aa10.07□□□□□ -0.8
VPS28-204ENST00000526054 RABGEF1Q9UJ41 708 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms