RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TCRBV7S2A1N4TA0A589 114 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ILVBLA1L0T0 632 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 RETP07949 1114 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CTSEP14091 401 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 NR1D1P20393 614 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 KDELR1P24390 212 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CLK1P49759 484 aaKnown RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC10A2Q12908 348 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 TSTA3Q13630 321 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 HLA-BQ31612 363 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 DHRS13Q6UX07 377 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 GDPD4Q6W3E5 623 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 CYP4V2Q6ZWL3 525 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 RHOT1Q8IXI2 618 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 RIBC1Q8N443 379 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SPERTQ8NA61 448 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 OR13H1Q8NG92 308 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 LMX1AQ8TE12 382 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SGCDQ92629 289 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 DCBLD2Q96PD2 775 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC2A11Q9BYW1 496 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 TCEAL2Q9H3H9 227 aaPredicted RBP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 ANKZF1Q9H8Y5 726 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 RDH14Q9HBH5 336 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 TMEM9BQ9NQ34 198 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 MARK1Q9P0L2 795 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SAMD15Q9P1V8 674 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 SLC27A6Q9Y2P4 619 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 NOX1Q9Y5S8 564 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 COL12A1Q99715 3063 aa7.87□□□□□ -1.15
LIMCH1-219ENST00000514096 A0A1W2PQJ5 194 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 A6NHS1 94 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GOLGA8KD6RF30 607 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 RAD51BO15315 384 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 DCTN3O75935 186 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PRNPP04156 253 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TMEM253P0C7T8 217 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ATF4P18848 351 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ATP5DP30049 168 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 RCVRNP35243 200 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 DRD3P35462 400 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ETV3P41162 512 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 EIF2DP41214 584 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 CLK3P49761 638 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GSTM4Q03013 218 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SUZ12Q15022 739 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SULT1C3Q6IMI6 304 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 NAPRTQ6XQN6 538 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ERN2Q76MJ5 926 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TREML1Q86YW5 311 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ESX1Q8N693 406 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 NATD1Q8N6N6 113 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 KIAA1958Q8N8K9 716 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 FAM71DQ8N9W8 422 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 MS4A14Q96JA4 679 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 LENG8Q96PV6 779 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TMEM121Q9BTD3 319 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 MRPL46Q9H2W6 279 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TMEM245Q9H330 911 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 CYP4F12Q9HCS2 524 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TM9SF3Q9HD45 589 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PCDH12Q9NPG4 1184 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TM7SF3Q9NS93 570 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 CDC23Q9UJX2 597 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 MED19A0JLT2 244 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TLDC2A0PJX2 215 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 BCLAF3A2AJT9 711 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GOLGA8OA6NCC3 632 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GOLGA8NF8WBI6 632 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 HYAL3O43820 417 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ADRB3P13945 408 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 CCNB1P14635 433 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ETS1P14921 441 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TCEA1P23193 301 aaKnown RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SERPINA4P29622 427 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SERPINB6P35237 376 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SERINC3Q13530 473 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 CRTC3Q6UUV7 619 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SETD3Q86TU7 594 aaPredicted RBP7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 NUDCD3Q8IVD9 361 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 SPNS2Q8IVW8 549 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GIPC3Q8TF64 312 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 KLHDC7BQ96G42 594 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 TTC25Q96NG3 672 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 FSD1LQ9BXM9 530 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GPR63Q9BZJ6 419 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 FOXP3Q9BZS1 431 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 EDARQ9UNE0 448 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ANKRD6Q9Y2G4 727 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PCDHGA8Q9Y5G5 932 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 C1orf232A0A0U1RR37 186 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 CCRL2O00421 344 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PRMT3O60678 531 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 ASLP04424 464 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 RBP3P10745 1247 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 PFKLP17858 780 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 RBL1P28749 1068 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 NEK3P51956 506 aa7.86□□□□□ -1.15
LIMCH1-219ENST00000514096 GEMIN4P57678 1058 aaKnown RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms