RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CAMK1GQ96NX5 476 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 INPP4AQ96PE3 977 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ALG2Q9H553 416 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 BLOC1S4Q9NUP1 217 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 THUMPD1Q9NXG2 353 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PLEKHA6Q9Y2H5 1048 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 NDUFB10O96000 172 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 LRG1P02750 347 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 GJA1P17302 382 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 FMO4P31512 558 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ANTXR2P58335 489 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 DAG1Q14118 895 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 IQCCQ4KMZ1 466 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 CCDC58Q4VC31 144 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 GCNT6Q5T4J0 391 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC30A2Q9BRI3 323 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 LGR4Q9BXB1 951 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ITPAQ9BY32 194 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 MKS1Q9NXB0 559 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 PCDH10Q9P2E7 1040 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF609O15014 1411 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ANXA3P12429 323 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 GLRA2P23416 452 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SERPINA4P29622 427 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 TKTL1P51854 596 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 BCL2L1Q07817 233 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 BAATQ14032 418 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 BOP1Q14137 746 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ASTE1Q2TB18 679 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 NADK2Q4G0N4 442 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 KHDC1Q4VXA5 237 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 TIGD2Q4W5G0 525 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF730Q6ZMV8 503 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC22A16Q86VW1 577 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC35C1Q96A29 364 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 BIRC8Q96P09 236 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 ISCA1Q9BUE6 129 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 KCNH7Q9NS40 1196 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 TAS2R3Q9NYW6 316 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 IKZF2Q9UKS7 526 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 FBXO5Q9UKT4 447 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 CFAP74Q9C0B2 1584 aa11.17□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC12A8A0AV02 714 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 XKRYO14609 159 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 MTA2O94776 668 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CYB5AP00167 134 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 IFNA1P01562 189 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 IL7P13232 177 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 EEFSECP57772 596 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 FGL1Q08830 312 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SUSD4Q5VX71 490 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 LINGO2Q7L985 606 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ARMC10Q8N2F6 343 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 POC1BQ8TC44 478 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SMG7Q92540 1137 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF700Q9H0M5 742 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 EBF3Q9H4W6 596 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SENP2Q9HC62 589 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 PRR12Q9ULL5 1215 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 MRPS33Q9Y291 106 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 HSPA12AO43301 675 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC28A2O43868 658 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 HLA-DPB1P04440 258 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 GIMD1P0DJR0 217 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 IRF1P10914 325 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CYP4B1P13584 511 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ADRA2BP18089 450 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SREBF1P36956 1147 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 USP41Q3LFD5 358 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 UTS2BQ765I0 119 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SPPL2CQ8IUH8 684 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 RASGEF1CQ8N431 466 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 LRRN4CLQ8ND94 238 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 TBC1D16Q8TBP0 767 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 BPIFB1Q8TDL5 484 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 NSUN4Q96CB9 384 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 POLR2J2Q9GZM3 115 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF358Q9NW07 568 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SEC14L3Q9UDX4 400 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 KCNH4Q9UQ05 1017 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CYB561D2O14569 222 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 DFNA5O60443 496 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SLITRK5O94991 958 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 TACSTD2P09758 323 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 C7P10643 843 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 TPH1P17752 444 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 AMPD1P23109 780 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 NOS2P35228 1153 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CCNFP41002 786 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC18A1P54219 525 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 TBX4P57082 545 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 TCEAL6Q6IPX3 200 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF410Q86VK4 478 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 NATD1Q8N6N6 113 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CLP1Q92989 425 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 PBDC1Q9BVG4 233 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 CADM1Q9BY67 442 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 OSBPL7Q9BZF2 842 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 ABCD2Q9UBJ2 740 aa11.16□□□□□ -0.62
LIMCH1-217ENST00000512946 POMPQ9Y244 141 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms