RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 HOXC4P09017 264 aaPredicted RBP29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 PRSS56P0CW18 603 aa29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 TUBB4BP68371 445 aa29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 SPEM2Q0P670 501 aa29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 CBLBQ13191 982 aa29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 CRLS1Q9UJA2 301 aa29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 SNX11Q9Y5W9 270 aa29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 OAS3Q9Y6K5 1087 aaKnown RBP29.37■■■□□ 2.29
LIMCH1-211ENST00000509638 ZCWPW2A0A1B0GU75 182 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 TMEM202A6NGA9 273 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 SLC25A14O95258 325 aaPredicted RBP29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 VAPBO95292 243 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 FOXN2P32314 431 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 CTSKP43235 329 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 CACNG1Q06432 222 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 PTK2BQ14289 1009 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 FZD2Q14332 565 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 DOK6Q6PKX4 331 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 GDAP1Q8TB36 358 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 RUBCNQ92622 972 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 WDR92Q96MX6 357 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 ANKZF1Q9H8Y5 726 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 IL1RAPL1Q9NZN1 696 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 NFU1Q9UMS0 254 aa29.36■■■□□ 2.29
LIMCH1-211ENST00000509638 TTC4O95801 387 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 CDKN1CP49918 316 aaPredicted RBP29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 IRX4P78413 519 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 PSAPL1Q6NUJ1 521 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 ASCL5Q7RTU5 278 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 PARGQ86W56 976 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 CCNJLQ8IV13 435 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 SERBP1Q8NC51 408 aaKnown RBP eCLIP29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 OR4L1Q8NH43 312 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 PLAC1Q9HBJ0 212 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 LRP3O75074 770 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 KELP23276 732 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 GPR33Q49SQ1 333 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 GPRC6AQ5T6X5 926 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 ENPP7Q6UWV6 458 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 UNC5AQ6ZN44 842 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 PIANPQ8IYJ0 282 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 NXPE1Q8N323 547 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 DDHD1Q8NEL9 900 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 ULK4Q96C45 1275 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 FGF22Q9HCT0 170 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 CATSPERZQ9NTU4 200 aa29.35■■■□□ 2.29
LIMCH1-211ENST00000509638 TDRD6O60522 2096 aaKnown RBP29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 TRBV5-4A0A0C4DH59 114 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 AGAP14A8MT82 685 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 MTX2O75431 263 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 ZNF806P0C7X5 589 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 ARCN1P48444 511 aaKnown RBP29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 SF3A2Q15428 464 aaKnown RBP29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 KHDC1Q4VXA5 237 aaKnown RBP29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 SPANXN3Q5MJ09 141 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 ZNF648Q5T619 568 aaPredicted RBP29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 KCTD16Q68DU8 428 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 TAS2R42Q7RTR8 314 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 OR56A4Q8NGH8 313 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 PYROXD1Q8WU10 500 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 UBXN4Q92575 508 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 PDXPQ96GD0 296 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 PARD6AQ9NPB6 346 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 SEMA4GQ9NTN9 838 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 KLQ9UEF7 1012 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 PNMA8BQ9ULN7 279 aaPredicted RBP29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 TMEM98Q9Y2Y6 226 aa29.34■■■□□ 2.29
LIMCH1-211ENST00000509638 LNP1A1A4G5 178 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 GOLGA8KD6RF30 607 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 GOLGA8TH3BQL2 631 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 ARHGAP33O14559 1287 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 LONRF1Q17RB8 773 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 LDLRAP1Q5SW96 308 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 STEAP4Q687X5 459 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 DCLK2Q8N568 766 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 OTUD6BQ8N6M0 293 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 TBRG4Q969Z0 631 aaKnown RBP eCLIP29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 SGSM3Q96HU1 749 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 MARCH4Q9P2E8 410 aaPredicted RBP29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 FAM169AQ9Y6X4 670 aa29.33■■■□□ 2.29
LIMCH1-211ENST00000509638 GVINP1Q7Z2Y8 2422 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 ASMTLO95671 621 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 SYPP08247 313 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 ENGP17813 658 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 ACRV1P26436 265 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 POLD2P49005 469 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 EIF2B5Q13144 721 aaKnown RBP29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 FASTKD1Q53R41 847 aaKnown RBP29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 SERPINA9Q86WD7 417 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 GSPT2Q8IYD1 628 aaKnown RBP29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 ZDHHC5Q9C0B5 715 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 MRPL40Q9NQ50 206 aaKnown RBP29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 C20orf96Q9NUD7 363 aaPredicted RBP29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 DNAJC28Q9NX36 388 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 SLC17A4Q9Y2C5 497 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 FAM186AA6NE01 2351 aa29.32■■■□□ 2.28
LIMCH1-211ENST00000509638 CEACAM5P06731 702 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 AKT1P31749 480 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 CSRP2Q16527 193 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 ALG11Q2TAA5 492 aa29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms