RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TRAPPC12Q8WVT3 735 aa2.54□□□□□ -2
NUP54-208ENST00000508604 ZNRF4Q8WWF5 429 aa2.54□□□□□ -2
NUP54-208ENST00000508604 SENP5Q96HI0 755 aaPredicted RBP2.54□□□□□ -2
NUP54-208ENST00000508604 PSD2Q9BQI7 771 aa2.54□□□□□ -2
NUP54-208ENST00000508604 H2AFJQ9BTM1 129 aa2.54□□□□□ -2
NUP54-208ENST00000508604 PELI2Q9HAT8 420 aa2.54□□□□□ -2
NUP54-208ENST00000508604 ADAMTS9Q9P2N4 1935 aa2.54□□□□□ -2
NUP54-208ENST00000508604 OR5K3A6NET4 321 aa2.53□□□□□ -2
NUP54-208ENST00000508604 TTC36A6NLP5 189 aa2.53□□□□□ -2
NUP54-208ENST00000508604 ANKRD66B4E2M5 251 aa2.53□□□□□ -2
NUP54-208ENST00000508604 SEC14L5O43304 696 aa2.53□□□□□ -2
NUP54-208ENST00000508604 CLPTM1O96005 669 aa2.53□□□□□ -2
NUP54-208ENST00000508604 CNPP09543 421 aaKnown RBP2.53□□□□□ -2
NUP54-208ENST00000508604 MSH3P20585 1137 aa2.53□□□□□ -2
NUP54-208ENST00000508604 MCCP23508 829 aa2.53□□□□□ -2
NUP54-208ENST00000508604 ITGA3P26006 1051 aa2.53□□□□□ -2
NUP54-208ENST00000508604 ELF1P32519 619 aa2.53□□□□□ -2
NUP54-208ENST00000508604 PPARDQ03181 441 aa2.53□□□□□ -2
NUP54-208ENST00000508604 MBTD1Q05BQ5 628 aa2.53□□□□□ -2
NUP54-208ENST00000508604 RNPS1Q15287 305 aaKnown RBP2.53□□□□□ -2
NUP54-208ENST00000508604 SNAI3Q3KNW1 292 aa2.53□□□□□ -2
NUP54-208ENST00000508604 HSP90AB2PQ58FF8 381 aa2.53□□□□□ -2
NUP54-208ENST00000508604 TCTEX1D4Q5JR98 221 aa2.53□□□□□ -2
NUP54-208ENST00000508604 ADAMTSL4-AS1Q5T5F5 129 aa2.53□□□□□ -2
NUP54-208ENST00000508604 C18orf63Q68DL7 685 aa2.53□□□□□ -2
NUP54-208ENST00000508604 CCSAPQ6IQ19 270 aaPredicted RBP2.53□□□□□ -2
NUP54-208ENST00000508604 ZNF280DQ6N043 979 aa2.53□□□□□ -2
NUP54-208ENST00000508604 DOK6Q6PKX4 331 aa2.53□□□□□ -2
NUP54-208ENST00000508604 BEST3Q8N1M1 668 aa2.53□□□□□ -2
NUP54-208ENST00000508604 ACVR1CQ8NER5 493 aa2.53□□□□□ -2
NUP54-208ENST00000508604 GRAMD2BQ96HH9 432 aa2.53□□□□□ -2
NUP54-208ENST00000508604 FGFBP2Q9BYJ0 223 aa2.53□□□□□ -2
NUP54-208ENST00000508604 FEM1BQ9UK73 627 aa2.53□□□□□ -2
NUP54-208ENST00000508604 PYGO1Q9Y3Y4 419 aa2.53□□□□□ -2
NUP54-208ENST00000508604 CSAG2Q9Y5P2 127 aa2.53□□□□□ -2
NUP54-208ENST00000508604 TMEM178BH3BS89 294 aa2.53□□□□□ -2
NUP54-208ENST00000508604 TNPO2O14787 897 aaKnown RBP2.53□□□□□ -2
NUP54-208ENST00000508604 GUCY1B2O75343 617 aa2.53□□□□□ -2
NUP54-208ENST00000508604 TACC1O75410 805 aa2.53□□□□□ -2
NUP54-208ENST00000508604 EDN1P05305 212 aa2.53□□□□□ -2
NUP54-208ENST00000508604 FAM157CP0CG43 387 aa2.53□□□□□ -2
NUP54-208ENST00000508604 SERPINB3P29508 390 aa2.53□□□□□ -2
NUP54-208ENST00000508604 SLC6A12P48065 614 aa2.53□□□□□ -2
NUP54-208ENST00000508604 TBX2Q13207 712 aaPredicted RBP2.53□□□□□ -2
NUP54-208ENST00000508604 MAD2L1Q13257 205 aaPredicted RBP2.53□□□□□ -2
NUP54-208ENST00000508604 DECR1Q16698 335 aa2.53□□□□□ -2
NUP54-208ENST00000508604 GTDC1Q4AE62 458 aa2.53□□□□□ -2
NUP54-208ENST00000508604 BHLHB9Q6PI77 547 aa2.53□□□□□ -2
NUP54-208ENST00000508604 MOGAT3Q86VF5 341 aa2.53□□□□□ -2
NUP54-208ENST00000508604 C2CD5Q86YS7 1000 aa2.53□□□□□ -2
NUP54-208ENST00000508604 LMNTD2Q8IXW0 634 aa2.53□□□□□ -2
NUP54-208ENST00000508604 SVIPQ8NHG7 77 aa2.53□□□□□ -2
NUP54-208ENST00000508604 POF1BQ8WVV4 589 aa2.53□□□□□ -2
NUP54-208ENST00000508604 ZSCAN31Q96LW9 406 aaPredicted RBP2.53□□□□□ -2
NUP54-208ENST00000508604 COG8Q96MW5 612 aa2.53□□□□□ -2
NUP54-208ENST00000508604 SYT15Q9BQS2 421 aa2.53□□□□□ -2
NUP54-208ENST00000508604 TRPC7Q9HCX4 862 aa2.53□□□□□ -2
NUP54-208ENST00000508604 ACSS1Q9NUB1 689 aaPredicted RBP2.53□□□□□ -2
NUP54-208ENST00000508604 C20orf141Q9NUB4 165 aa2.53□□□□□ -2
NUP54-208ENST00000508604 MOB4Q9Y3A3 225 aa2.53□□□□□ -2
NUP54-208ENST00000508604 UTYO14607 1347 aa2.53□□□□□ -2
NUP54-208ENST00000508604 KIAA1210Q9ULL0 1709 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 A0A0G2JNG1 304 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 PLOD2O00469 737 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 FTCDO95954 541 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 PTGER3P43115 390 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 CLDN20P56880 219 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 ENPP2Q13822 863 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 KIR2DS5Q14953 304 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 TXNDC8Q6A555 127 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 PWWP2BQ6NUJ5 590 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 PACS1Q6VY07 963 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 PQLC2Q6ZP29 291 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 RSRC2Q7L4I2 434 aaKnown RBP2.52□□□□□ -2.01
NUP54-208ENST00000508604 PLD5Q8N7P1 536 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 ZNF611Q8N823 705 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 LSM14AQ8ND56 463 aaKnown RBP2.52□□□□□ -2.01
NUP54-208ENST00000508604 PRMT6Q96LA8 375 aaPredicted RBP2.52□□□□□ -2.01
NUP54-208ENST00000508604 FOXN4Q96NZ1 517 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 USP44Q9H0E7 712 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 SEBOXQ9HB31 216 aaPredicted RBP2.52□□□□□ -2.01
NUP54-208ENST00000508604 SIX2Q9NPC8 291 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 PLCXD1Q9NUJ7 323 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 SLC38A7Q9NVC3 462 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 PADI3Q9ULW8 664 aa2.52□□□□□ -2.01
NUP54-208ENST00000508604 KLF2Q9Y5W3 355 aaPredicted RBP2.52□□□□□ -2.01
NUP54-208ENST00000508604 KCNN4O15554 427 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 HOXB5P09067 269 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 NFKBIAP25963 317 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 TRIM14Q14142 442 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 POSTNQ15063 836 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 ARHGEF16Q5VV41 709 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 ZDHHC20Q5W0Z9 365 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 LRRTM1Q86UE6 522 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 FBXL16Q8N461 479 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 PPP4R1Q8TF05 950 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 APBB2Q92870 758 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 RHBDF1Q96CC6 855 aa2.51□□□□□ -2.01
NUP54-208ENST00000508604 OXNAD1Q96HP4 312 aaPredicted RBP2.51□□□□□ -2.01
NUP54-208ENST00000508604 HARBI1Q96MB7 349 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms