RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 GREB1Q4ZG55 1949 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FAM92AA1XBS5 289 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 AQP12BA6NM10 295 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NBNO60934 754 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CLASP2O75122 1294 aaKnown RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HMBSP08397 361 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HSD17B1P14061 328 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CDH2P19022 906 aaPredicted RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CHRM3P20309 590 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 OGNP20774 298 aaKnown RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 STC1P52823 247 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ATP6V0D1P61421 351 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CAPRIN1Q14444 709 aaKnown RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TYSND1Q2T9J0 566 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PARP15Q460N3 678 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RAB44Q7Z6P3 723 aaPredicted RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 AQP12AQ8IXF9 295 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TFAP2CQ92754 450 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMIGD2Q96BF3 282 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PPWD1Q96BP3 646 aaKnown RBP16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NSMCE3Q96MG7 304 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TCF12Q99081 682 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PDFQ9HBH1 243 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CATSPERZQ9NTU4 200 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16■□□□□ 0.154e-7■■□□□ 11.8
MSH5-SAPCD1-208ENST00000498473 BTRCQ9Y297 605 aa16■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ARHGAP10A1A4S6 786 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 AKAP10O43572 662 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 E2F6O75461 281 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMCC1O94876 653 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 EPOP01588 193 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 IGLV3-27P01718 113 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 LINC00032P0C843 101 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZNF24P17028 368 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 LBPP18428 481 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SLC6A2P23975 617 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DSC1Q08554 894 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ILF2Q12905 390 aaKnown RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 BTG3Q14201 252 aaPredicted RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MAP7D1Q3KQU3 841 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NADSYN1Q6IA69 706 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PRMT9Q6P2P2 845 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RTN4RL1Q86UN2 441 aaPredicted RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SPPL2CQ8IUH8 684 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 EPHX4Q8IUS5 362 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DDIASQ8IXT1 998 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 C7orf61Q8IZ16 206 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RPRD1AQ96P16 312 aaPredicted RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIB3Q96RU7 358 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CCT7Q99832 543 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PNPLA3Q9NST1 481 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DDX18Q9NVP1 670 aaKnown RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 EGFL7Q9UHF1 273 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RIMKLBQ9ULI2 386 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMEM221A6NGB7 291 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RPLP2P05387 115 aaKnown RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ACRP10323 421 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HGFP14210 728 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 UGT1A6P19224 532 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CLCQ05315 142 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NFE2Q16621 373 aaPredicted RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMEM259Q4ZIN3 620 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 LCN8Q6JVE9 175 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PAQR3Q6TCH7 311 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 LRRC8DQ7L1W4 858 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ATAD1Q8NBU5 361 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 KIAA1191Q96A73 305 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TUBGCP3Q96CW5 907 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CDKN2AIPNLQ96HQ2 116 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CYP2S1Q96SQ9 504 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HAUS8Q9BT25 410 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CAAP1Q9H8G2 361 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MARCH2Q9P0N8 246 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MYRFQ9Y2G1 1151 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GPR45Q9Y5Y3 372 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ACTL7AQ9Y615 435 aa15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SPTBN5Q9NRC6 3674 aaKnown RBP15.99■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SAC3D1A6NKF1 404 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ANGPT2O15123 496 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 KERAO60938 352 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SOAT2O75908 522 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 STAMBPO95630 424 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GFAPP14136 432 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 EEF1DP29692 281 aaKnown RBP15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 OR1E1P30953 314 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZFP36L2P47974 494 aaKnown RBP15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 YBEYP58557 167 aaPredicted RBP15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ECT2LQ008S8 904 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GEN1Q17RS7 908 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TBCELQ5QJ74 424 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 BLOC1S3Q6QNY0 202 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FIBCD1Q8N539 461 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MFSD2AQ8NA29 543 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SMYD1Q8NB12 490 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 LRRC58Q96CX6 371 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PCDHA9Q9Y5H5 950 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SPO11Q9Y5K1 396 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SLC12A8A0AV02 714 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DHRS12A0PJE2 317 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HNRNPRO43390 633 aaKnown RBP15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms