RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 UNC93B1Q9H1C4 597 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 AKTIPQ9H8T0 292 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 SEMA4BQ9NPR2 832 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 SMPD4Q9NXE4 827 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 MAGED1Q9Y5V3 778 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 A0A0J9YYE9 177 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 NME4O00746 187 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 OR1I1O60431 355 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 WISP3O95389 354 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 KLKB1P03952 638 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 FDXRP22570 491 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 DIO3P55073 304 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 RHDQ02161 417 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 SLC14A2Q15849 920 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 PARP8Q8N3A8 854 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 LPCAT1Q8NF37 534 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 MAGEE2Q8TD90 523 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 TUBGCP3Q96CW5 907 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 OLA1Q9NTK5 396 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 OAZ3Q9UMX2 235 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 DNAJC15Q9Y5T4 150 aa16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 NUP214P35658 2090 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-210ENST00000494566 RHOBTB1O94844 696 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 CDK14O94921 469 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 MTHFD2P13995 350 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 PAX3P23760 479 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 DNAJB1P25685 340 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 AAK1Q2M2I8 961 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 CATSPER1Q8NEC5 780 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 C19orf60Q96EN9 201 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 CINPQ9BW66 212 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 FNIP2Q9P278 1114 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 BCAP29Q9UHQ4 241 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 LRFN2Q9ULH4 789 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 OR6C75A6NL08 312 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 GOLGA8CPA6NN73 597 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 SUPT3HB4E1H0 165 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 CDC7O00311 574 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 PIP5K1BO14986 540 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 AP1G1O43747 822 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 FGF1P05230 155 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 AGTR2P50052 363 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 STX5Q13190 355 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 LDLRAP1Q5SW96 308 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 MRNIPQ6NTE8 343 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 GLT6D1Q7Z4J2 308 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 BRSK1Q8TDC3 778 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 CCDC126Q96EE4 140 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 FEM1CQ96JP0 617 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 DUS2Q9NX74 493 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 UTP6Q9NYH9 597 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 C5orf42Q9H799 3197 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 ACSL4O60488 711 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 CAPN3P20807 821 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 PRDX3P30048 256 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 OR1D2P34982 312 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 HERVK_113P63132 956 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 HERC3Q15034 1050 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 TSNQ15631 228 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 SLC22A9Q8IVM8 553 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 PIANPQ8IYJ0 282 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 GABPB2Q8TAK5 448 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 ERVK-6Q9BXR3 956 aa16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 SARS2Q9NP81 518 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-210ENST00000494566 A0A1W2PPW3 197 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 GIPC1O14908 333 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 SNAP91O60641 907 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 GALTP07902 379 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 HLA-DPA1P20036 260 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 CD247P20963 164 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 EEF1B2P24534 225 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 STC1P52823 247 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 STX1BP61266 288 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 SETMARQ53H47 684 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 RALGPS2Q86X27 583 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 RAET1EQ8TD07 263 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 SGCDQ92629 289 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 VPS50Q96JG6 964 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 TEX37Q96LM6 180 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 SLC2A11Q9BYW1 496 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 NDUFA13Q9P0J0 144 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 MED16Q9Y2X0 877 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 SQORQ9Y6N5 450 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 ANKRD36A6QL64 1941 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 IQCF5A8MTL0 148 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 H3BNH8 94 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 EI24O14681 340 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 COCHO43405 550 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 PIM1P11309 404 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 ATP5C1P36542 298 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 EMP3P54852 163 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 DCTN2Q13561 401 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 SQLEQ14534 574 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 UGT3A2Q3SY77 523 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 PSAPL1Q6NUJ1 521 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 TMEM26Q6ZUK4 368 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 LARP4Q71RC2 724 aaKnown RBP eCLIP16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 EPHX4Q8IUS5 362 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 FBXO22Q8NEZ5 403 aa16.41■□□□□ 0.22
CCDC88B-210ENST00000494566 DTNBP1Q96EV8 351 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms