RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ILF3Q12906 894 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 USP4Q13107 963 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SLC27A1Q6PCB7 646 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PIGWQ7Z7B1 504 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ACSF2Q96CM8 615 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 AURKBQ96GD4 344 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-209ENST00000472056 SYT15Q9BQS2 421 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 PCBD2Q9H0N5 130 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 IFT46Q9NQC8 304 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 OR12D3Q9UGF7 316 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 MAB21L2Q9Y586 359 aa13.25□□□□□ -0.29
COL6A3-209ENST00000472056 ARID1AO14497 2285 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 SPATA31A6Q5VVP1 1343 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 FABP12A6NFH5 140 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 UGT2B4P06133 528 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PVALBP20472 110 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 CCSAPQ6IQ19 270 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 STYK1Q6J9G0 422 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 ZYG11AQ6WRX3 759 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 RIOX2Q8IUF8 465 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 UNKQ9C0B0 810 aaKnown RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 ETS2P15036 469 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 HSD3B2P26439 372 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 BUD31P41223 144 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 MYBPC1Q00872 1141 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PRKD1Q15139 912 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF181Q2M3W8 571 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 DCST1Q5T197 706 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 ZYG11BQ9C0D3 744 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 UNKLQ9H9P5 680 aaKnown RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 SEMA4BQ9NPR2 832 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PIK3C2BO00750 1634 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 TNNI3P19429 210 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 CACNB3P54284 484 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 SCARF1Q14162 830 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 MOGQ16653 247 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 GNASQ5JWF2 1037 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 HPS6Q86YV9 775 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 GSTCDQ8NEC7 633 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 CYP7B1O75881 506 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PDHA2P29803 388 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PTPN5P54829 565 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 ABRQ12979 859 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 C16orf46Q6P387 395 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 FAM171BQ6P995 826 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 EBF2Q9HAK2 575 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 COPZ2Q9P299 210 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 RBM7Q9Y580 266 aaKnown RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 ZNF99A8MXY4 864 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 LLGL2Q6P1M3 1020 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 SERPINA13PQ6UXR4 307 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PRMT6Q96LA8 375 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PXMP2Q9NR77 195 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 GRHL1Q9NZI5 618 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 KAT7O95251 611 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 CYB5AP00167 134 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PRPS2P11908 318 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PLK1P53350 603 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 SDR16C5Q8N3Y7 309 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PIGXQ8TBF5 258 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 PCDHB12Q9Y5F1 795 aa13.24□□□□□ -0.29
COL6A3-209ENST00000472056 OAS3Q9Y6K5 1087 aaKnown RBP13.24□□□□□ -0.29
COL6A3-209ENST00000472056 hCG_1818297A0A087WSY0 165 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 AP2A2O94973 939 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 EPHA3P29320 983 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 GNG2P59768 71 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 PLEKHN1Q494U1 663 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 RNF220Q5VTB9 566 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 MIB1Q86YT6 1006 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 RBM12BQ8IXT5 1001 aaKnown RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SEMA4DQ92854 862 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 INPP4AQ96PE3 977 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 PSMB4P28070 264 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 RALGDSQ12967 914 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 CTXN3Q4LDR2 81 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 OSGEPL1Q9H4B0 414 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 CAPN8A6NHC0 703 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 OR2AT4A6NND4 320 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 FMO4P31512 558 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 ARL3P36405 182 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 KCTD8Q6ZWB6 473 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 PPCDCQ96CD2 204 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 GLT1D1Q96MS3 346 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 CAPN10Q9HC96 672 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 IFT172Q9UG01 1749 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 IQCMA0A1B0GVH7 501 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 CCR4P51679 360 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 AP2S1P53680 142 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 FGL1Q08830 312 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 PON3Q15166 354 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SNAPC1Q16533 368 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 OR4A15Q8NGL6 344 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SPOCK2Q92563 424 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SLC27A6Q9Y2P4 619 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 SLC12A8A0AV02 714 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 FSCN2O14926 492 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 AGR2O95994 175 aa13.23□□□□□ -0.29
COL6A3-209ENST00000472056 PENKP01210 267 aaPredicted RBP13.23□□□□□ -0.29
COL6A3-209ENST00000472056 GSCP56915 257 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms