RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 NT5DC3Q86UY8 548 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 IL22RA1Q8N6P7 574 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 GPR26Q8NDV2 337 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 CCDC112Q8NEF3 446 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-210ENST00000469897 SH3KBP1Q96B97 665 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 SPATA16Q9BXB7 569 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 ASPSCR1Q9BZE9 553 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 FAM117AQ9C073 453 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 OR2AG1Q9H205 316 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 CARD9Q9H257 536 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 RMI1Q9H9A7 625 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 TRIM39Q9HCM9 518 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 SARS2Q9NP81 518 aaKnown RBP13.14□□□□□ -0.31
CPSF4-210ENST00000469897 PRDM8Q9NQV8 689 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 ZNHIT6Q9NWK9 470 aaKnown RBP13.14□□□□□ -0.31
CPSF4-210ENST00000469897 KLHL3Q9UH77 587 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 SHROOM3Q8TF72 1996 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 RP1P56715 2156 aa13.14□□□□□ -0.31
CPSF4-210ENST00000469897 A6NCN8 305 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 APOL1O14791 398 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 DUX1O43812 170 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 SLC25A14O95258 325 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-210ENST00000469897 TPM3P06753 285 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 TNNT1P13805 278 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 ATP1A2P50993 1020 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 NFKB2Q00653 900 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 CLCA4Q14CN2 919 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 PDK1Q15118 436 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 WDR74Q6RFH5 385 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-210ENST00000469897 PRICKLE2Q7Z3G6 844 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 ARHGAP22Q7Z5H3 698 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 RFX6Q8HWS3 928 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 CACNA2D3Q8IZS8 1091 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 SPATA22Q8NHS9 363 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 IMP4Q96G21 291 aaKnown RBP13.13□□□□□ -0.31
CPSF4-210ENST00000469897 PLEKHG4BQ96PX9 1271 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 TRIB3Q96RU7 358 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 DNAJC7Q99615 494 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 DDA1Q9BW61 102 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 TBC1D10AQ9BXI6 508 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 SLC12A9Q9BXP2 914 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 BRD8Q9H0E9 1235 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 STN1Q9H668 368 aaKnown RBP13.13□□□□□ -0.31
CPSF4-210ENST00000469897 MAGEE1Q9HCI5 957 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 KLC4Q9NSK0 619 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 SPTLC3Q9NUV7 552 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 SLC23A2Q9UGH3 650 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 HEMK1Q9Y5R4 338 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-210ENST00000469897 CFAP46Q8IYW2 2715 aa13.13□□□□□ -0.31
CPSF4-210ENST00000469897 SSU72P8A0A1W2PR75 194 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 RAD1O60671 282 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 MT-CYBP00156 380 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-210ENST00000469897 SLC4A1P02730 911 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 F3P13726 295 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 LIFP15018 202 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 ARHGAP25P42331 645 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 DYNLT1P63172 113 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 MC2RQ01718 297 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 KCNC4Q03721 635 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 CDK18Q07002 472 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 ADGRG6Q86SQ4 1221 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 BMPERQ8N8U9 685 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 RTP4Q96DX8 246 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 CCDC42Q96M95 316 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-210ENST00000469897 GPR63Q9BZJ6 419 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 SPRY4Q9C004 299 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 SLC25A51Q9H1U9 297 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 NHEJ1Q9H9Q4 299 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-210ENST00000469897 STARD5Q9NSY2 213 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 UBP1Q9NZI7 540 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 SCHIP1Q9P0W5 487 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-210ENST00000469897 SAE1Q9UBE0 346 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-210ENST00000469897 CPNE7Q9UBL6 633 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 PILRAQ9UKJ1 303 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 HYOU1Q9Y4L1 999 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 ADGRG1Q9Y653 693 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 LRRK1Q38SD2 2015 aa13.12□□□□□ -0.31
CPSF4-210ENST00000469897 KIR2DS5A0A0G2JLQ3 304 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 A0A0G2JNG1 304 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 OR5K4A6NMS3 321 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 KIR2DS3K7RE56 304 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 AURKAO14965 403 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 MTX2O75431 263 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 WISP1O95388 367 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 KRT1P04264 644 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 SFTPCP11686 197 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 SLC2A4P14672 509 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 ZFXP17010 805 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-210ENST00000469897 RAB15P59190 212 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 KIR2DS5Q14953 304 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 LLGL1Q15334 1064 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 TEX44Q53QW1 395 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 ODF2Q5BJF6 829 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 ZNF569Q5MCW4 686 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 CCDC70Q6NSX1 233 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 CRTC3Q6UUV7 619 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 PHYKPLQ8IUZ5 450 aa13.11□□□□□ -0.31
CPSF4-210ENST00000469897 UNC5BQ8IZJ1 945 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms