RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 RAD18Q9NS91 495 aa18.83■□□□□ 0.6
SMC4-209ENST00000468653 CD84Q9UIB8 345 aa18.83■□□□□ 0.6
SMC4-209ENST00000468653 TRMT6Q9UJA5 497 aaKnown RBP18.83■□□□□ 0.6
SMC4-209ENST00000468653 GNPTGQ9UJJ9 305 aa18.83■□□□□ 0.6
SMC4-209ENST00000468653 MED16Q9Y2X0 877 aa18.83■□□□□ 0.6
SMC4-209ENST00000468653 OAS3Q9Y6K5 1087 aaKnown RBP18.83■□□□□ 0.6
SMC4-209ENST00000468653 STON1Q9Y6Q2 735 aa18.83■□□□□ 0.6
SMC4-209ENST00000468653 BRWD1Q9NSI6 2320 aa18.83■□□□□ 0.6
SMC4-209ENST00000468653 C1QTNF3-AMACRE9PGA6 284 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 TGDSO95455 350 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 HNRNPLP14866 589 aaKnown RBP eCLIP18.82■□□□□ 0.62e-15■■■■■ 47.4
SMC4-209ENST00000468653 CD9P21926 228 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 KCNA5P22460 613 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 RPS3P23396 243 aaKnown RBP eCLIP18.82■□□□□ 0.67e-64■■■■■ 337.8
SMC4-209ENST00000468653 MMP12P39900 470 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 SKIV2L2P42285 1042 aaKnown RBP18.82■□□□□ 0.6
SMC4-209ENST00000468653 TNFRSF4P43489 277 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 METAP1P53582 386 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 PRKAA2P54646 552 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 RALGDSQ12967 914 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 MMAAQ8IVH4 418 aaKnown RBP18.82■□□□□ 0.6
SMC4-209ENST00000468653 ZNF513Q8N8E2 541 aaPredicted RBP18.82■□□□□ 0.6
SMC4-209ENST00000468653 ULK4Q96C45 1275 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 BOCQ9BWV1 1114 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 SPATA16Q9BXB7 569 aa18.82■□□□□ 0.6
SMC4-209ENST00000468653 TCF20Q9UGU0 1960 aaKnown RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 AGAP14A8MT82 685 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ELFN1P0C7U0 828 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 CD1DP15813 335 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 WASP42768 502 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 HNRNPH2P55795 449 aaKnown RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 ASPHQ12797 758 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ATP13A5Q4VNC0 1218 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 SETMARQ53H47 684 aaPredicted RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 LIPMQ5VYY2 423 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 Q6ZVL8 140 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 NKAPQ8N5F7 415 aaKnown RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 SIDT2Q8NBJ9 832 aaKnown RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 PPP4R1Q8TF05 950 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ALG9Q9H6U8 611 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 SARS2Q9NP81 518 aaKnown RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 ZDHHC3Q9NYG2 299 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ITM2BQ9Y287 266 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ZNF106Q9H2Y7 1883 aaKnown RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 C2CD4DB7Z1M9 353 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 H3BMM5 538 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 NPC1O15118 1278 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ITM2AO43736 263 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ZBTB14O43829 449 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 DLX3O60479 287 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ATP5F1P24539 256 aaPredicted RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 ETV3P41162 512 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 PSMD8P48556 350 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 SEC13P55735 322 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 DCDC1P59894 354 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 ABCE1P61221 599 aaKnown RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 ELP6Q0PNE2 266 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 C6orf89Q6UWU4 347 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 LIPIQ6XZB0 460 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 CCDC97Q96F63 343 aaPredicted RBP18.81■□□□□ 0.6
SMC4-209ENST00000468653 COPS8Q99627 209 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 C20orf27Q9GZN8 174 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 CDH19Q9H159 772 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 GALPQ9UBC7 116 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 DCTN4Q9UJW0 460 aa18.81■□□□□ 0.6
SMC4-209ENST00000468653 TRIOBPQ9H2D6 2365 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 RGSL1A5PLK6 1076 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 IQCF5A8MTL0 148 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 SPECC1L-ADORA2AF8WAN1 911 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 LYPLA1O75608 230 aaPredicted RBP18.8■□□□□ 0.6
SMC4-209ENST00000468653 TIE1P35590 1138 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 PFKPQ01813 784 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 ACOX1Q15067 660 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 FAM46CQ5VWP2 391 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 ISCA2Q86U28 154 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 CD200R1Q8TD46 325 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 SCAMP4Q969E2 229 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 CCDC126Q96EE4 140 aa18.8■□□□□ 0.6
SMC4-209ENST00000468653 WRAP53Q9BUR4 548 aaKnown RBP18.8■□□□□ 0.6
SMC4-209ENST00000468653 TMEM114B3SHH9 223 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 F8W8V4 182 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 K7EQS6 105 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 PLK4O00444 970 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 NEMP1O14524 444 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 ADRB3P13945 408 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 CTHP32929 405 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 NSG1P42857 185 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 IL2P60568 153 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 ATP6V0D1P61421 351 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 SMAD4Q13485 552 aaKnown RBP18.79■□□□□ 0.6
SMC4-209ENST00000468653 SKIV2LQ15477 1246 aaKnown RBP18.79■□□□□ 0.6
SMC4-209ENST00000468653 CCDC85BQ15834 202 aaPredicted RBP18.79■□□□□ 0.6
SMC4-209ENST00000468653 NAPRTQ6XQN6 538 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 ERN2Q76MJ5 926 aaKnown RBP18.79■□□□□ 0.6
SMC4-209ENST00000468653 CLDN19Q8N6F1 224 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 OR6Y1Q8NGX8 325 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 RFWD2Q8NHY2 731 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 SLC30A3Q99726 388 aa18.79■□□□□ 0.6
SMC4-209ENST00000468653 GATA5Q9BWX5 397 aaPredicted RBP18.79■□□□□ 0.6
SMC4-209ENST00000468653 DERL2Q9GZP9 239 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms