RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 EDEM2Q9BV94 578 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 CDK19Q9BWU1 502 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 HEMGNQ9BXL5 484 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 KCNK13Q9HB14 408 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 LTB4R2Q9NPC1 389 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 ABCB8Q9NUT2 735 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 ZDHHC7Q9NXF8 308 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RGL1Q9NZL6 768 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 AFF4Q9UHB7 1163 aaKnown RBP4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 COMMD3-BMI1R4GMX3 469 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 RAD50Q92878 1312 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 FANCIQ9NVI1 1328 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 CNTNAP2Q9UHC6 1331 aa4.88□□□□□ -1.63
CCDC88A-210ENST00000468534 A0A087WWL8 130 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 NPIPB15A6NHN6 443 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC9B1P1A6NJY1 282 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 OR6C76A6NM76 312 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 TMEM233B4DJY2 109 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 HSBP1L1C9JCN9 74 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 GOLGA8SH3BPF8 625 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 EXTL3O43909 919 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 GMFGO60234 142 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PSMD10O75832 226 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 IDH1O75874 414 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ARP10275 920 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 RALAP11233 206 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ANXA8P13928 327 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PRF1P14222 555 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 FDPSP14324 419 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PTBP1P26599 531 aaKnown RBP eCLIP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 GABRB3P28472 473 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 GGT5P36269 586 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 CCT6AP40227 531 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PAFAH1B1P43034 410 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PTGER3P43115 390 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 LMAN1P49257 510 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 HARS2P49590 506 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 BMXP51813 675 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PMS2P54278 862 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ADARP55265 1226 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 RWDD2BP57060 319 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 EIF3EP60228 445 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 CSNK2BP67870 215 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 RPP30P78346 268 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 OLR1P78380 273 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ABATP80404 500 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 DR1Q01658 176 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ZNF91Q05481 1191 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PPIDQ08752 370 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 CTBP1Q13363 440 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 CUL1Q13616 776 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 CBFBQ13951 182 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 KCNC3Q14003 757 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 BTG3Q14201 252 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 RBBP5Q15291 538 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 NTRK2Q16620 822 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC5A9Q2M3M2 681 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 TRIM71Q2Q1W2 868 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 LETM2Q2VYF4 491 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 FBXO43Q4G163 708 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 RAB41Q5JT25 222 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 RIPPLY2Q5TAB7 128 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ANXA8L1Q5VT79 327 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ARL6IP4Q66PJ3 421 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 LRRC8DQ7L1W4 858 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 TAS2R42Q7RTR8 314 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 MIER3Q7Z3K6 550 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 TADA2BQ86TJ2 420 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 DNAAF5Q86Y56 855 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ZDHHC17Q8IUH5 632 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC22A9Q8IVM8 553 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SIX6OS1Q8N1H7 587 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 FRMD1Q8N878 549 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 NSMCE1Q8WV22 266 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 THRSPQ92748 146 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 CORO2AQ92828 525 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 KAT2BQ92831 832 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 NMD3Q96D46 503 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 COQ8BQ96D53 544 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 LRRC39Q96DD0 335 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 MSANTD3Q96H12 275 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PSKH2Q96QS6 385 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 USP28Q96RU2 1077 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 RTKNQ9BST9 563 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 NAA11Q9BSU3 229 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SYT17Q9BSW7 474 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 TUBB6Q9BUF5 446 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SPZ1Q9BXG8 430 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 PINK1Q9BXM7 581 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 FAM129AQ9BZQ8 928 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 CCSER1Q9C0I3 900 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC25A18Q9H1K4 315 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 FOXP1Q9H334 677 aaPredicted RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 COQ10BQ9H8M1 238 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 G6PC2Q9NQR9 355 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 MBNL1Q9NR56 388 aaKnown RBP4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SDHAF3Q9NRP4 125 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 ZSCAN32Q9NX65 697 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 TMOD3Q9NYL9 352 aa4.87□□□□□ -1.63
CCDC88A-210ENST00000468534 SLC8A2Q9UPR5 921 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms