RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 DCDC1P59894 354 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 MC1RQ01726 317 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 KCNC4Q03721 635 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 AP1B1Q10567 949 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 TFDP2Q14188 446 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 LY6DQ14210 128 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 MESDQ14696 234 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 C16orf72Q14CZ0 275 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 HENMT1Q5T8I9 393 aaKnown RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 KIAA1614Q5VZ46 1190 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 KCTD16Q68DU8 428 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 IYDQ6PHW0 289 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 ZNF574Q6ZN55 896 aaPredicted RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 MARK2Q7KZI7 788 aaKnown RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 CHST15Q7LFX5 561 aaPredicted RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 NT5DC3Q86UY8 548 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 PLXDC1Q8IUK5 500 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 RHOT1Q8IXI2 618 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 RBM12BQ8IXT5 1001 aaKnown RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 LPCAT1Q8NF37 534 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 SLC35G2Q8TBE7 412 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 ARRDC2Q8TBH0 407 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 BRSK1Q8TDC3 778 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 SCAMP4Q969E2 229 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 CCDC74BQ96LY2 380 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 DNAJC7Q99615 494 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 FERMT1Q9BQL6 677 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 SLC25A51Q9H1U9 297 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 TRABDQ9H4I3 376 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 UCK1Q9HA47 277 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 FBXO8Q9NRD0 319 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 DTLQ9NZJ0 730 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 NFKBIL1Q9UBC1 381 aaPredicted RBP7.01□□□□□ -1.29
VPS41-208ENST00000448833 CD84Q9UIB8 345 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 INTUQ9ULD6 942 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 TMEM98Q9Y2Y6 226 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 HEY1Q9Y5J3 304 aa7.01□□□□□ -1.29
VPS41-208ENST00000448833 LRRD1A4D1F6 860 aa7□□□□□ -1.29
VPS41-208ENST00000448833 PMS2P1A4D2B8 440 aa7□□□□□ -1.29
VPS41-208ENST00000448833 KLHL33A6NCF5 533 aa7□□□□□ -1.29
VPS41-208ENST00000448833 KMOO15229 486 aa7□□□□□ -1.29
VPS41-208ENST00000448833 NUAK1O60285 661 aa7□□□□□ -1.29
VPS41-208ENST00000448833 DNAJC6O75061 913 aa7□□□□□ -1.29
VPS41-208ENST00000448833 PPFIA2O75334 1257 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ZNF189O75820 626 aaPredicted RBP7□□□□□ -1.29
VPS41-208ENST00000448833 PRLP01236 227 aa7□□□□□ -1.29
VPS41-208ENST00000448833 EPOP01588 193 aa7□□□□□ -1.29
VPS41-208ENST00000448833 HLA-DQB2P05538 268 aa7□□□□□ -1.29
VPS41-208ENST00000448833 THRAP10827 490 aa7□□□□□ -1.29
VPS41-208ENST00000448833 CCL4P13236 92 aa7□□□□□ -1.29
VPS41-208ENST00000448833 XRCC1P18887 633 aaPredicted RBP7□□□□□ -1.29
VPS41-208ENST00000448833 ETV5P41161 510 aa7□□□□□ -1.29
VPS41-208ENST00000448833 CD86P42081 329 aa7□□□□□ -1.29
VPS41-208ENST00000448833 MC2RQ01718 297 aa7□□□□□ -1.29
VPS41-208ENST00000448833 GBE1Q04446 702 aa7□□□□□ -1.29
VPS41-208ENST00000448833 CDK18Q07002 472 aa7□□□□□ -1.29
VPS41-208ENST00000448833 TGIF1Q15583 401 aa7□□□□□ -1.29
VPS41-208ENST00000448833 QPCTQ16769 361 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ATP13A4Q4VNC1 1196 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ZNF569Q5MCW4 686 aa7□□□□□ -1.29
VPS41-208ENST00000448833 CHCHD2P9Q5T1J5 151 aaPredicted RBP7□□□□□ -1.29
VPS41-208ENST00000448833 SLC9A4Q6AI14 798 aa7□□□□□ -1.29
VPS41-208ENST00000448833 BORAQ6PGQ7 559 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ATG14Q6ZNE5 492 aa7□□□□□ -1.29
VPS41-208ENST00000448833 NYAP1Q6ZVC0 841 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ZFAND4Q86XD8 727 aa7□□□□□ -1.29
VPS41-208ENST00000448833 FAM129CQ86XR2 697 aa7□□□□□ -1.29
VPS41-208ENST00000448833 CNGA4Q8IV77 575 aa7□□□□□ -1.29
VPS41-208ENST00000448833 TRIM48Q8IWZ4 208 aa7□□□□□ -1.29
VPS41-208ENST00000448833 CACNA2D3Q8IZS8 1091 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7□□□□□ -1.29
VPS41-208ENST00000448833 TRAM1L1Q8N609 369 aa7□□□□□ -1.29
VPS41-208ENST00000448833 PQLC3Q8N755 202 aa7□□□□□ -1.29
VPS41-208ENST00000448833 RCBTB1Q8NDN9 531 aa7□□□□□ -1.29
VPS41-208ENST00000448833 DTX3LQ8TDB6 740 aa7□□□□□ -1.29
VPS41-208ENST00000448833 SLC37A2Q8TED4 501 aa7□□□□□ -1.29
VPS41-208ENST00000448833 NCSTNQ92542 709 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ART4Q93070 314 aa7□□□□□ -1.29
VPS41-208ENST00000448833 NKD1Q969G9 470 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ZDHHC16Q969W1 377 aa7□□□□□ -1.29
VPS41-208ENST00000448833 IMP4Q96G21 291 aaKnown RBP7□□□□□ -1.29
VPS41-208ENST00000448833 CALR3Q96L12 384 aaKnown RBP7□□□□□ -1.29
VPS41-208ENST00000448833 TTC25Q96NG3 672 aa7□□□□□ -1.29
VPS41-208ENST00000448833 PLEKHG4BQ96PX9 1271 aa7□□□□□ -1.29
VPS41-208ENST00000448833 VAT1Q99536 393 aa7□□□□□ -1.29
VPS41-208ENST00000448833 NUDT22Q9BRQ3 303 aa7□□□□□ -1.29
VPS41-208ENST00000448833 SPATA16Q9BXB7 569 aa7□□□□□ -1.29
VPS41-208ENST00000448833 GPR63Q9BZJ6 419 aa7□□□□□ -1.29
VPS41-208ENST00000448833 ZCCHC2Q9C0B9 1178 aaKnown RBP7□□□□□ -1.29
VPS41-208ENST00000448833 LUC7LQ9NQ29 371 aaKnown RBP7□□□□□ -1.29
VPS41-208ENST00000448833 HACD3Q9P035 362 aa7□□□□□ -1.29
VPS41-208ENST00000448833 CPNE7Q9UBL6 633 aa7□□□□□ -1.29
VPS41-208ENST00000448833 TUBD1Q9UJT1 453 aa7□□□□□ -1.29
VPS41-208ENST00000448833 NENFQ9UMX5 172 aa7□□□□□ -1.29
VPS41-208ENST00000448833 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7□□□□□ -1.29
VPS41-208ENST00000448833 ZNF106Q9H2Y7 1883 aaKnown RBP6.99□□□□□ -1.29
VPS41-208ENST00000448833 TRBV23OR9-2A0A075B6M9 112 aa6.99□□□□□ -1.29
VPS41-208ENST00000448833 A0A0A6YYK5 440 aaPredicted RBP6.99□□□□□ -1.29
VPS41-208ENST00000448833 LILRA5A6NI73 299 aa6.99□□□□□ -1.29
VPS41-208ENST00000448833 EFCAB7A8K855 629 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms