RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PMS2P54278 862 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 PPARDQ03181 441 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 MTA1Q13330 715 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 SCARB2Q14108 478 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 MYBPC2Q14324 1141 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 NAB2Q15742 525 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 COL28A1Q2UY09 1125 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 MANEAQ5SRI9 462 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 JADE1Q6IE81 842 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 TFAP2DQ7Z6R9 452 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 DNAJB7Q7Z6W7 309 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 SLFN11Q7Z7L1 901 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 TBC1D26Q86UD7 250 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 DHX40Q8IX18 779 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 IL17RCQ8NAC3 791 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 TDRD5Q8NAT2 981 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 GOT1L1Q8NHS2 421 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 B4GALNT2Q8NHY0 566 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 GSDMBQ8TAX9 411 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 FAR1Q8WVX9 515 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 SGCDQ92629 289 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 VPS33AQ96AX1 596 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 PGAP3Q96FM1 320 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 P2RY11Q96G91 374 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 NLRP4Q96MN2 994 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 FRG2BQ96QU4 278 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 GATA5Q9BWX5 397 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 IFIH1Q9BYX4 1025 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 EDEM3Q9BZQ6 932 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 SLCO5A1Q9H2Y9 848 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 HIPK3Q9H422 1215 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 OSGEPL1Q9H4B0 414 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 RANGRFQ9HD47 186 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 IL1RAPL2Q9NP60 686 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 LTB4R2Q9NPC1 389 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 OGFRQ9NZT2 677 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 MARCH4Q9P2E8 410 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 IPO11Q9UI26 975 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 PPIEQ9UNP9 301 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 COG5Q9UP83 839 aa4.22□□□□□ -1.73
VPS29-202ENST00000447578 AAR2Q9Y312 384 aaKnown RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 IBTKQ9P2D0 1353 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 RGPD8O14715 1765 aaPredicted RBP4.22□□□□□ -1.73
VPS29-202ENST00000447578 MST1RQ04912 1400 aa4.21□□□□□ -1.73
VPS29-202ENST00000447578 NFAT5O94916 1531 aa4.21□□□□□ -1.73
VPS29-202ENST00000447578 NOTCH4Q99466 2003 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 A0A1W2PPC1 479 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 TYW5A2RUC4 315 aaKnown RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 CXorf65A6NEN9 183 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 GLOD5A6NK44 160 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 TAF4O00268 1085 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 SLC28A2O43868 658 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 KIF1CO43896 1103 aaKnown RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 NKX2-2O95096 273 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 NDUFB8O95169 186 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 GGPS1O95749 300 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 HOXB7P09629 217 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 PLA2G2AP14555 144 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 ST6GAL1P15907 406 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 IL7RP16871 459 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 MUTP22033 750 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 MSH2P43246 934 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 TNNT3P45378 269 aaPredicted RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 SOX2P48431 317 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 RAD23AP54725 363 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 HDAC4P56524 1084 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 PLIN5Q00G26 463 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 DRAP1Q14919 205 aaPredicted RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 ALG11Q2TAA5 492 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 PRTGQ2VWP7 1150 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 IGSF11Q5DX21 431 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 C9orf152Q5JTZ5 239 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 BEND3Q5T5X7 828 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 ERMARDQ5T6L9 678 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 NUGGCQ68CJ6 796 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 RBM44Q6ZP01 1051 aaKnown RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 Q6ZTC4 211 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 PPP1R42Q7Z4L9 355 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 KBTBD6Q86V97 674 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 WDR5BQ86VZ2 330 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 SNX32Q86XE0 403 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 LURAP1LQ8IV03 231 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 ZCCHC9Q8N567 271 aaKnown RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 PI4KAP1Q8N8J0 262 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 Q8NFD4 153 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 RASSF8Q8NHQ8 419 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 TMEM170AQ8WVE7 144 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 DNAAF4Q8WXU2 420 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 TMEM68Q96MH6 324 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 FCRL5Q96RD9 977 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 FRMD8Q9BZ67 464 aaPredicted RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 PLEKHA4Q9H4M7 779 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 PDZD7Q9H5P4 517 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 MRPL44Q9H9J2 332 aaKnown RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 ARHGEF38Q9NXL2 777 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 C5AR2Q9P296 337 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 ABI3Q9P2A4 366 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 SEL1LQ9UBV2 794 aa4.21□□□□□ -1.74
VPS29-202ENST00000447578 SEC63Q9UGP8 760 aaKnown RBP4.21□□□□□ -1.74
VPS29-202ENST00000447578 CARD8Q9Y2G2 431 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms