RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 TRPV1Q8NER1 839 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 BEST2Q8NFU1 509 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 MCFD2Q8NI22 146 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 SPATA20Q8TB22 786 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ZSCAN18Q8TBC5 510 aaPredicted RBP2.77□□□□□ -1.97
LIG4-203ENST00000442234 NANPQ8TBE9 248 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ZFP90Q8TF47 636 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 CA5BP1Q8WTZ4 195 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 C1orf54Q8WWF1 131 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 DEDD2Q8WXF8 326 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ST8SIA4Q92187 359 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 USP13Q92995 863 aaPredicted RBP2.77□□□□□ -1.97
LIG4-203ENST00000442234 TMEM80Q96HE8 168 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 RADILQ96JH8 1075 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 BTBD6Q96KE9 485 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ART5Q96L15 291 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 HSFY1Q96LI6 401 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 LURAP1Q96LR2 239 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 SSX3Q99909 188 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 PDCD10Q9BUL8 212 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 BDH2Q9BUT1 245 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 DSCC1Q9BVC3 393 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 TRIM62Q9BVG3 475 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 CINPQ9BW66 212 aaPredicted RBP2.77□□□□□ -1.97
LIG4-203ENST00000442234 CCDC106Q9BWC9 280 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 TTYH3Q9C0H2 523 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 PUS7LQ9H0K6 701 aaKnown RBP2.77□□□□□ -1.97
LIG4-203ENST00000442234 COQ10BQ9H8M1 238 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 CAB39LQ9H9S4 337 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ERVK-5Q9HDB9 667 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ZDHHC4Q9NPG8 344 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 DPP3Q9NY33 737 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ACTR10Q9NZ32 417 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 ASH2LQ9UBL3 628 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 PTBP2Q9UKA9 531 aaKnown RBP2.77□□□□□ -1.97
LIG4-203ENST00000442234 OGDHLQ9ULD0 1010 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 AURKCQ9UQB9 309 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 NR2E1Q9Y466 385 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 PCDHGA7Q9Y5G6 932 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 INTS1Q8N201 2190 aaKnown RBP2.77□□□□□ -1.97
LIG4-203ENST00000442234 PKD1L3Q7Z443 1732 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 MYH14Q7Z406 1995 aaKnown RBP2.77□□□□□ -1.97
LIG4-203ENST00000442234 CSPG4Q6UVK1 2322 aa2.77□□□□□ -1.97
LIG4-203ENST00000442234 HEATR9A2RTY3 570 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 METTL21EPA6NDL7 271 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 TRIM49D1C9J1S8 452 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 TRIM77I1YAP6 450 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 SYN3O14994 580 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 TRIM24O15164 1050 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 PRPF4O43172 522 aaKnown RBP eCLIP2.76□□□□□ -1.972e-6■■■■□ 20.6
LIG4-203ENST00000442234 GATCO43716 136 aaKnown RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 GREM1O60565 184 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 ADAM11O75078 769 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 PTP4A3O75365 173 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 GGPS1O95749 300 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 NDST3O95803 873 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 NDUFB10O96000 172 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 C8BP07358 591 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 NR3C2P08235 984 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 BMP3P12645 472 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 SMPD1P17405 629 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 TNFAIP3P21580 790 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 CBLP22681 906 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 TGM1P22735 817 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 VAMP1P23763 118 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 PSMA3P25788 255 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 HNRNPH3P31942 346 aaKnown RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 CSTF2P33240 577 aaKnown RBP eCLIP2.76□□□□□ -1.97
LIG4-203ENST00000442234 COILP38432 576 aaPredicted RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 CSKP41240 450 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 CDK8P49336 464 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 PKNOX1P55347 436 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 FLI1Q01543 452 aaPredicted RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 EXOSC10Q01780 885 aaKnown RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 DLX2Q07687 328 aaPredicted RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 CBX2Q14781 532 aaPredicted RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 GRIK4Q16099 956 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 TMEM240Q5SV17 173 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 FAM182AQ5T1J6 154 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 PDZK1Q5T2W1 519 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 BROXQ5VW32 411 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 IZUMO3Q5VZ72 239 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 KRT39Q6A163 491 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 ANKRD40Q6AI12 368 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 DENND5AQ6IQ26 1287 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 PSRC1Q6PGN9 363 aaPredicted RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 TXNDC11Q6PKC3 985 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 ZNF852Q6ZMS4 543 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 ZNF517Q6ZMY9 492 aaPredicted RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 IKBIPQ70UQ0 350 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 CHST15Q7LFX5 561 aaPredicted RBP2.76□□□□□ -1.97
LIG4-203ENST00000442234 PRSS42Q7Z5A4 293 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 DPPA2Q7Z7J5 298 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 COMMD7Q86VX2 200 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 IRF2BP1Q8IU81 584 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 WDR49Q8IV35 697 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 SCML4Q8N228 414 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 SFRP1Q8N474 314 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 AVL9Q8NBF6 648 aa2.76□□□□□ -1.97
LIG4-203ENST00000442234 XXYLT1Q8NBI6 393 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms