RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 RASSF1Q9NS23 344 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 CLEC4AQ9UMR7 237 aa17.1■□□□□ 0.33
PTPRF-209ENST00000438120 DHX15O43143 795 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SNAP91O60641 907 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 PTPN9P43378 593 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 PSMD4P55036 377 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 ZNF567Q8N184 647 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SFRP1Q8N474 314 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SLC9A6Q92581 669 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 AP2M1Q96CW1 435 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 MAML3Q96JK9 1138 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 LMLNQ96KR4 655 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 TMEM131LA2VDJ0 1609 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SNUPNO95149 360 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 FGBP02675 491 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 MT-ND1P03886 318 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 RHOQP17081 205 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 TCEA1P23193 301 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 CRHR1P34998 444 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 RBM44Q6ZP01 1051 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 HIST2H2ABQ8IUE6 130 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 RTL3Q8N8U3 475 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 ADAMTS15Q8TE58 950 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 TP53INP1Q96A56 240 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 AIF1LQ9BQI0 150 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 IPPKQ9H8X2 491 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 HBS1LQ9Y450 684 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 NDST3O95803 873 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 CHRNGP07510 517 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 MAT2AP31153 395 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 GNPDA1P46926 289 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 NLGN2Q8NFZ4 835 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 MAFBQ9Y5Q3 323 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 A8MUI8 341 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 KHDRBS3O75525 346 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 UGT2B17O75795 530 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SNHG28P0DPA3 235 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 ETS2P15036 469 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 NMBRP28336 390 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 PBX1P40424 430 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 NR1D2Q14995 579 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 RNASE12Q5GAN4 147 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 NMUR2Q9GZQ4 415 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 STXBP5LQ9Y2K9 1186 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 PCDHA2Q9Y5H9 948 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SOWAHBA6NEL2 793 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 TMCC2O75069 709 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 ERN1O75460 977 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 VIPP01282 170 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 POLR2JP52435 117 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 C2orf80Q0P641 193 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 PEG10Q86TG7 708 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 GPR135Q8IZ08 494 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 POC5Q8NA72 575 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 TSPAN18Q96SJ8 248 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 NIFKQ9BYG3 293 aaKnown RBP17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SH3GLB1Q9Y371 365 aa17.09■□□□□ 0.33
PTPRF-209ENST00000438120 SEPT4O43236 478 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 TPSB2P20231 275 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 AKT2P31751 481 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 CACNG1Q06432 222 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 TPSAB1Q15661 275 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 RASGEF1CQ8N431 466 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 SUCOQ9UBS9 1254 aaKnown RBP17.08■□□□□ 0.33
PTPRF-209ENST00000438120 GNA12Q03113 381 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 DLK2Q6UY11 383 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 CLEC4CQ8WTT0 213 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 ARHGEF4Q9NR80 690 aa17.08■□□□□ 0.33
PTPRF-209ENST00000438120 DUS2Q9NX74 493 aaKnown RBP17.08■□□□□ 0.33
PTPRF-209ENST00000438120 KCNU1A8MYU2 1149 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 FPGTO14772 594 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 EFNA1P20827 205 aaPredicted RBP17.08■□□□□ 0.32
PTPRF-209ENST00000438120 MZT2BQ6NZ67 158 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 C7orf61Q8IZ16 206 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 AMER2Q8N7J2 671 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 ESAMQ96AP7 390 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 EBPLQ9BY08 206 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 CRNNQ9UBG3 495 aaPredicted RBP17.08■□□□□ 0.32
PTPRF-209ENST00000438120 SSNA1O43805 119 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 FADS2O95864 444 aaKnown RBP17.08■□□□□ 0.32
PTPRF-209ENST00000438120 LILRA4P59901 499 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 KLF10Q13118 480 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 FAM182AQ5T1J6 154 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 ESRP1Q6NXG1 681 aaKnown RBP17.08■□□□□ 0.32
PTPRF-209ENST00000438120 PSMG2Q969U7 264 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 TIFAQ96CG3 184 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 MCUBQ9NWR8 336 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 KELP23276 732 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 RPIAP49247 311 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 TCEAL5Q5H9L2 206 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 SLC34A3Q8N130 599 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 CPSF7Q8N684 471 aaKnown RBP17.08■□□□□ 0.32
PTPRF-209ENST00000438120 SIDT2Q8NBJ9 832 aaKnown RBP17.08■□□□□ 0.32
PTPRF-209ENST00000438120 OR52J3Q8NH60 311 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 TCF25Q9BQ70 676 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 RTKNQ9BST9 563 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 PDCD10Q9BUL8 212 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 MRPS33Q9Y291 106 aaKnown RBP17.08■□□□□ 0.32
PTPRF-209ENST00000438120 CPQQ9Y646 472 aa17.08■□□□□ 0.32
PTPRF-209ENST00000438120 GOT2P00505 430 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms