RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ARHGAP40Q5TG30 622 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 GUSBP11Q6P575 273 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 LRRC8BQ6P9F7 803 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 IGF2-ASQ6U949 168 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 PARGQ86W56 976 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 DCP2Q8IU60 420 aaKnown RBP12.12□□□□□ -0.47
PTPRF-208ENST00000437607 LSMEM2Q8N112 164 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 FAM174AQ8TBP5 190 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 MAPK15Q8TD08 544 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 PPP1R16AQ96I34 528 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 MRGPRX2Q96LB1 330 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 APOL2Q9BQE5 337 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 DUSP23Q9BVJ7 150 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 C1QTNF2Q9BXJ5 285 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 TDRD1Q9BXT4 1180 aaKnown RBP12.12□□□□□ -0.47
PTPRF-208ENST00000437607 TCEAL2Q9H3H9 227 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-208ENST00000437607 ARFGAP3Q9NP61 516 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 SAYSD1Q9NPB0 183 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 SAMD15Q9P1V8 674 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 HECAQ9UBI9 543 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-208ENST00000437607 GGT7Q9UJ14 662 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 SATB2Q9UPW6 733 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 ENTPD2Q9Y5L3 495 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 AHCTF1Q8WYP5 2266 aa12.12□□□□□ -0.47
PTPRF-208ENST00000437607 TTC24A2A3L6 582 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 EME2A4GXA9 379 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 TP73O15350 636 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 AQP9O43315 295 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 PIGNO95427 931 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 H2AFXP16104 143 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 GKP32189 559 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 RABIFP47224 123 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 DUSP3P51452 185 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 EPHB1P54762 984 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 SESN2P58004 480 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 CDK18Q07002 472 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 TRAF2Q12933 501 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 PDIA2Q13087 525 aaKnown RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 EIF2B5Q13144 721 aaKnown RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 MTM1Q13496 603 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 OLIG2Q13516 323 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 PDE1CQ14123 709 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 DEFB133Q30KQ1 61 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 C3orf38Q5JPI3 329 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 PERM1Q5SV97 790 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 ARMC12Q5T9G4 340 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 ZCCHC8Q6NZY4 707 aaKnown RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 FBXO38Q6PIJ6 1188 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 CRTC1Q6UUV9 634 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 ZNF534Q76KX8 674 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 EFL1Q7Z2Z2 1120 aaKnown RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 TMC3Q7Z5M5 1100 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 PLPP6Q8IY26 295 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 RBFAQ8N0V3 343 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 LPCAT1Q8NF37 534 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 OR52K1Q8NGK4 314 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 PDCD6IPQ8WUM4 868 aaKnown RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 KCNE4Q8WWG9 221 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 TTC9Q92623 222 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 CAVIN3Q969G5 261 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 TADA1Q96BN2 335 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 ATXN7L3BQ96GX2 97 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 LENG8Q96PV6 779 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-208ENST00000437607 HEPHQ9BQS7 1158 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 BFARQ9NZS9 450 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 ITM2BQ9Y287 266 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 CSNK1G3Q9Y6M4 447 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 COL12A1Q99715 3063 aa12.11□□□□□ -0.47
PTPRF-208ENST00000437607 UBR5O95071 2799 aaPredicted RBP12.1□□□□□ -0.47
PTPRF-208ENST00000437607 CPED1A4D0V7 1026 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 IGLON5A6NGN9 336 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 KLK10O43240 276 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 POP4O95707 220 aaKnown RBP12.1□□□□□ -0.47
PTPRF-208ENST00000437607 NDST3O95803 873 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 FAM153BP0C7A2 387 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 ADRA1AP35348 466 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 MAGEA3P43357 314 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 UCNP55089 124 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 PFN3P60673 137 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 RHDQ02161 417 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 DHX9Q08211 1270 aaKnown RBP12.1□□□□□ -0.47
PTPRF-208ENST00000437607 SEPT6Q14141 434 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 GALNT3Q14435 633 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 SLC1A5Q15758 541 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 MYLK3Q32MK0 819 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 FAM153CQ494X1 144 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 BROXQ5VW32 411 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 CASC4Q6P4E1 433 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 KDELC2Q7Z4H8 507 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 ZBED8Q8IZ13 594 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 SLC25A41Q8N5S1 370 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 PPHLN1Q8NEY8 458 aaKnown RBP12.1□□□□□ -0.47
PTPRF-208ENST00000437607 SNRNP27Q8WVK2 155 aaKnown RBP12.1□□□□□ -0.47
PTPRF-208ENST00000437607 LRRC39Q96DD0 335 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 WBP1Q96G27 269 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 PWWP2AQ96N64 755 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 TTC25Q96NG3 672 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 SLC46A1Q96NT5 459 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 BOCQ9BWV1 1114 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 OSBPL1AQ9BXW6 950 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms