RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 GLT6D1Q7Z4J2 308 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 RBM23Q86U06 439 aaKnown RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 PDSS2Q86YH6 399 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 KLHDC8BQ8IXV7 354 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CMTR2Q8IYT2 770 aaKnown RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 SIDT2Q8NBJ9 832 aaKnown RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 CALML6Q8TD86 181 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 VPS33AQ96AX1 596 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CNBD2Q96M20 576 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 HCFC1R1Q9NWW0 138 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 FKBPLQ9UIM3 349 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 MID2Q9UJV3 735 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 A0A1W2PRU2 124 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 DRGXA6NNA5 263 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 WASH4PA8MWX3 477 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 SUPT3HB4E1H0 165 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 PIP5K1BO14986 540 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 PER2O15055 1255 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 SLC7A4O43246 635 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 TGM5O43548 720 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 SUPT3HO75486 399 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 OR6B1O95007 311 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 C1RP00736 705 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 UGT1A6P19224 532 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 IMPDH1P20839 514 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 ME2P23368 584 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CA5AP35218 305 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 PSME3P61289 254 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 NRG1Q02297 640 aaPredicted RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 RING1Q06587 406 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 SMARCB1Q12824 385 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 MED21Q13503 144 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 TLR1Q15399 786 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 FUT11Q495W5 492 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 SETMARQ53H47 684 aaPredicted RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 RNF219Q5W0B1 726 aaPredicted RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 FUNDC1Q8IVP5 155 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CLDN19Q8N6F1 224 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 TEX26Q8N6G2 289 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 PIP4K2CQ8TBX8 421 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 BRSK1Q8TDC3 778 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 ZFAND2BQ8WV99 257 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 EEF1AKMT1Q8WVE0 214 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 MYLIPQ8WY64 445 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 TUBGCP3Q96CW5 907 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 TEX37Q96LM6 180 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 RAD9AQ99638 391 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CINPQ9BW66 212 aaPredicted RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 VCXQ9H320 206 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 MFSD1Q9H3U5 465 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 TUBB1Q9H4B7 451 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CATSPERZQ9NTU4 200 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 SLAMF8Q9P0V8 285 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 MED16Q9Y2X0 877 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 PCDHB9Q9Y5E1 797 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 PCDHGA7Q9Y5G6 932 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CPQQ9Y646 472 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 V9GYQ6 96 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 MIA3Q5JRA6 1907 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 LINC01553A4QN01 128 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 FAM149AA5PLN7 773 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 RFXAPO00287 272 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 INSIG1O15503 277 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 RHOCP08134 193 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 RBP1P09455 135 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 IMPDH2P12268 514 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 LAG3P18627 525 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 GGT5P36269 586 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 CLCN5P51795 746 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 HTRA4P83105 476 aaPredicted RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 LRRC23Q53EV4 343 aaPredicted RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 GAREM2Q75VX8 874 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 RETREG3Q86VR2 466 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 C2orf15Q8WU43 125 aaKnown RBP9.42□□□□□ -0.9
CUX1-206ENST00000437600 HERVK_113Q902F9 699 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 TCF25Q9BQ70 676 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 C1orf50Q9BV19 199 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 VTI1BQ9UEU0 232 aa9.42□□□□□ -0.9
CUX1-206ENST00000437600 WDR87Q6ZQQ6 2873 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 MAGEA13PA6NCF6 341 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 NPEPPSL1A6NEC2 478 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 BTN3A1O00481 513 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 NR5A2O00482 541 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 TBL1XO60907 577 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 EFCAB14O75071 495 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 CLASP2O75122 1294 aaKnown RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 RFPL2O75678 378 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 MT-ND1P03886 318 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ATP6V1B1P15313 513 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ZNF37AP17032 561 aaPredicted RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 EEF1DP29692 281 aaKnown RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 HTR7P34969 479 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 PIK3CGP48736 1102 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 OXCT1P55809 520 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ZNF177Q13360 481 aaPredicted RBP9.41□□□□□ -0.9
CUX1-206ENST00000437600 LRRC73Q5JTD7 316 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 ZNF697Q5TEC3 545 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 C16orf89Q6UX73 402 aa9.41□□□□□ -0.9
CUX1-206ENST00000437600 CAMK1DQ8IU85 385 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms