RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 UGT1A7Q9HAW7 530 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A10Q9HAW8 530 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 UGT1A8Q9HAW9 530 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 PLAC1Q9HBJ0 212 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 MTRF1LQ9UGC7 380 aaKnown RBP16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ZC3H7BQ9UGR2 993 aaKnown RBP16.86■□□□□ 0.29
COL7A1-202ENST00000422991 SLC6A14Q9UN76 642 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 ANKRD6Q9Y2G4 727 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 SLC30A1Q9Y6M5 507 aa16.86■□□□□ 0.29
COL7A1-202ENST00000422991 KNL1Q8NG31 2342 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 TRBV5-4A0A0C4DH59 114 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 SPTY2D1-AS1A0A0U1RR47 76 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 VAPBO95292 243 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 PAMP19021 973 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 TNFRSF8P28908 595 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 CTSKP43235 329 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 ARCN1P48444 511 aaKnown RBP16.85■□□□□ 0.29
COL7A1-202ENST00000422991 GRIK2Q13002 908 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 FZD2Q14332 565 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 GPR33Q49SQ1 333 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 SPANXN3Q5MJ09 141 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 KIAA2013Q8IYS2 634 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 OR6P1Q8NGX9 317 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 ULK4Q96C45 1275 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 CFAP36Q96G28 342 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 WDR92Q96MX6 357 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.85■□□□□ 0.29
COL7A1-202ENST00000422991 NFU1Q9UMS0 254 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 OAS3Q9Y6K5 1087 aaKnown RBP16.85■□□□□ 0.29
COL7A1-202ENST00000422991 FAM169AQ9Y6X4 670 aa16.85■□□□□ 0.29
COL7A1-202ENST00000422991 V9GYY5 206 aaPredicted RBP16.85■□□□□ 0.29
COL7A1-202ENST00000422991 SPTBN4Q9H254 2564 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 LRP3O75074 770 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 SLC25A14O95258 325 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-202ENST00000422991 PRSS56P0CW18 603 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 HTR1BP28222 390 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 CDKN1CP49918 316 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-202ENST00000422991 PTK2BQ14289 1009 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 KIF19Q2TAC6 998 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 ZRANB3Q5FWF4 1079 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 GPRC6AQ5T6X5 926 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 TCEAL6Q6IPX3 200 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 PSAPL1Q6NUJ1 521 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 UNC5AQ6ZN44 842 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 PIANPQ8IYJ0 282 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 NXPE1Q8N323 547 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 EIF1ADQ8N9N8 165 aaKnown RBP16.84■□□□□ 0.29
COL7A1-202ENST00000422991 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.84■□□□□ 0.29
COL7A1-202ENST00000422991 DDHD1Q8NEL9 900 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 OR4L1Q8NH43 312 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 PYROXD1Q8WU10 500 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 TCEAL3Q969E4 200 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 FAM96AQ9H5X1 160 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 FGF22Q9HCT0 170 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 FSCN3Q9NQT6 498 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 CRLS1Q9UJA2 301 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 SNX11Q9Y5W9 270 aa16.84■□□□□ 0.29
COL7A1-202ENST00000422991 TMEM202A6NGA9 273 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 KHNYNO15037 678 aaKnown RBP16.83■□□□□ 0.28
COL7A1-202ENST00000422991 ZNF806P0C7X5 589 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 KELP23276 732 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 ACRV1P26436 265 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 MAGEA4P43358 317 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 LONRF1Q17RB8 773 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 KHDC1Q4VXA5 237 aaKnown RBP16.83■□□□□ 0.28
COL7A1-202ENST00000422991 LDLRAP1Q5SW96 308 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 CEP128Q6ZU80 1094 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 PARGQ86W56 976 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 SERPINA9Q86WD7 417 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 UBXN4Q92575 508 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 NUSAP1Q9BXS6 441 aaKnown RBP16.83■□□□□ 0.28
COL7A1-202ENST00000422991 ZDHHC5Q9C0B5 715 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 TSPYL1Q9H0U9 437 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 ERVMER34-1Q9H9K5 563 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 ARFGAP3Q9NP61 516 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 CATSPERZQ9NTU4 200 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 IL1RAPL1Q9NZN1 696 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 MARCH4Q9P2E8 410 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-202ENST00000422991 PNMA8BQ9ULN7 279 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-202ENST00000422991 SLC17A4Q9Y2C5 497 aa16.83■□□□□ 0.28
COL7A1-202ENST00000422991 ARHGAP33O14559 1287 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 TNFRSF10CO14798 259 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 CEACAM5P06731 702 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 MYBL2P10244 700 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 IRX4P78413 519 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 SPEM2Q0P670 501 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 EIF2B5Q13144 721 aaKnown RBP16.82■□□□□ 0.28
COL7A1-202ENST00000422991 FRG1Q14331 258 aaKnown RBP16.82■□□□□ 0.28
COL7A1-202ENST00000422991 SEMA3AQ14563 771 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 SMAD1Q15797 465 aaKnown RBP16.82■□□□□ 0.28
COL7A1-202ENST00000422991 DBN1Q16643 649 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 ERCC6LQ2NKX8 1250 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 ALG11Q2TAA5 492 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 FASTKD1Q53R41 847 aaKnown RBP16.82■□□□□ 0.28
COL7A1-202ENST00000422991 ZNF648Q5T619 568 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-202ENST00000422991 KCTD16Q68DU8 428 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 DOK6Q6PKX4 331 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 TAS2R42Q7RTR8 314 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 RELL1Q8IUW5 271 aa16.82■□□□□ 0.28
COL7A1-202ENST00000422991 GSPT2Q8IYD1 628 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms