RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ALDH4A1P30038 563 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 SERPINB10P48595 397 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 HMGCS2P54868 508 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ISL1P61371 349 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 DMPKQ09013 629 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 TOP3AQ13472 1001 aaPredicted RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 RPS6KA2Q15349 733 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 MFSD4BQ5TF39 518 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 BEND5Q7L4P6 421 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 GALNT13Q8IUC8 556 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 IPMKQ8NFU5 416 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 RHOXF1Q8NHV9 184 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 TP53INP1Q96A56 240 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ISG20Q96AZ6 181 aaKnown RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 TUBGCP3Q96CW5 907 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 NSMCE2Q96MF7 247 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 SLC2A13Q96QE2 648 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ZNF300Q96RE9 604 aaPredicted RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 KCNA7Q96RP8 456 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 PPP1R16BQ96T49 567 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 FDXACB1Q9BRP7 624 aaPredicted RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 SLIRPQ9GZT3 109 aaKnown RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 SMURF2Q9HAU4 748 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 INTS7Q9NVH2 962 aaKnown RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 A6NL46 340 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 TBC1D4O60343 1298 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 MAN1A2O60476 641 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 KCNK2O95069 426 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ARIH2O95376 493 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 C1RP00736 705 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 RAP2AP10114 183 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 TGFB3P10600 412 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 PAMP19021 973 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ALDH7A1P49419 539 aaKnown RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 CLCN5P51795 746 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 AIF1P55008 147 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 VBP1P61758 197 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 PHC1P78364 1004 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 PPP2R2BQ00005 443 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 EMX2Q04743 252 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 CARTPTQ16568 116 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 GLYATQ6IB77 296 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 HFE2Q6ZVN8 426 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 USP43Q70EL4 1123 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ADCK1Q86TW2 530 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 ZDHHC13Q8IUH4 622 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 LYSMD2Q8IV50 215 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 GLMNQ92990 594 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 YIPF6Q96EC8 236 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 YME1L1Q96TA2 773 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 FICDQ9BVA6 458 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 OSBPL10Q9BXB5 764 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 PIF1Q9H611 641 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 MID1IP1Q9NPA3 183 aa10.64□□□□□ -0.71
USP54-204ENST00000422491 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP54-204ENST00000422491 POLR3BQ9NW08 1133 aaPredicted RBP10.64□□□□□ -0.71
USP54-204ENST00000422491 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP54-204ENST00000422491 FAM92AA1XBS5 289 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 TYW5A2RUC4 315 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 ISPDA4D126 451 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 PTGES3LE9PB15 166 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 G3V2T6 193 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 RFPL2O75678 378 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 UPK1BO75841 260 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 LRIG2O94898 1065 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 NDST3O95803 873 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 CHEK2O96017 543 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 FYNP06241 537 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ENO2P09104 434 aaPredicted RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 PCNAP12004 261 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 PAX3P23760 479 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ADRA1AP35348 466 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 GRK3P35626 688 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 MTHFRP42898 656 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 MRPL19P49406 292 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 NDUFV1P49821 464 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 IST1P53990 364 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 TPD52P55327 224 aaPredicted RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 KCNK10P57789 538 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 LSM3P62310 102 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 EPS8Q12929 822 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 KCNAB2Q13303 367 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ACOX1Q15067 660 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 NOL9Q5SY16 702 aaKnown RBP10.63□□□□□ -0.71
USP54-204ENST00000422491 GPR158Q5T848 1215 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 HECTD2Q5U5R9 776 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SLX4IPQ5VYV7 408 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 IL31Q6EBC2 164 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 TMEM199Q8N511 208 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 DTWD1Q8N5C7 304 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 PNPLA1Q8N8W4 532 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 HTRA1Q92743 480 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 PTERQ96BW5 349 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SDCCAG3Q96C92 435 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 TSPAN17Q96FV3 270 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 TSGA13Q96PP4 275 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 ASB2Q96Q27 587 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 LRRC3Q9BY71 257 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 SMOC2Q9H3U7 446 aa10.63□□□□□ -0.71
USP54-204ENST00000422491 DSN1Q9H410 356 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms