RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 TREX1Q9NSU2 369 aa8.4□□□□□ -1.06
TRIM48-201ENST00000417545 NSMCE4AQ9NXX6 385 aa8.4□□□□□ -1.06
TRIM48-201ENST00000417545 NINJ2Q9NZG7 142 aa8.4□□□□□ -1.06
TRIM48-201ENST00000417545 IL1RAPL1Q9NZN1 696 aa8.4□□□□□ -1.06
TRIM48-201ENST00000417545 KLQ9UEF7 1012 aa8.4□□□□□ -1.06
TRIM48-201ENST00000417545 DOCK9Q9BZ29 2069 aa8.4□□□□□ -1.06
TRIM48-201ENST00000417545 ZDBF2Q9HCK1 2354 aa8.4□□□□□ -1.07
TRIM48-201ENST00000417545 TNRC6BQ9UPQ9 1833 aaKnown RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 FANCMQ8IYD8 2048 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 VCANP13611 3396 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 POM121BA6NF01 834 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 H0Y8X5 98 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 H3BM21 787 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 K7ESM1 405 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 EPN2O95208 641 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ERVK-10P10266 1014 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ZNF7P17097 686 aaPredicted RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 GM2AP17900 193 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 OGNP20774 298 aaKnown RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ACRV1P26436 265 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 TEAD1P28347 426 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ECHS1P30084 290 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 FOXN2P32314 431 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 HOXD12P35452 270 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ATXN3P54252 364 aaPredicted RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 KIAA1024LP59773 190 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 CDK3Q00526 305 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ACVR1Q04771 509 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 IFFO1Q0D2I5 559 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 OVGP1Q12889 678 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 PEX6Q13608 980 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 NAA30Q147X3 362 aaPredicted RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 NFATC4Q14934 902 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 BRD3Q15059 726 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 DUOXA1Q1HG43 343 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 KLHL38Q2WGJ6 581 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 HSP90AA5PQ58FG0 334 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 GPRC6AQ5T6X5 926 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 STEAP4Q687X5 459 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 PTRHD1Q6GMV3 140 aaKnown RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 PSAPL1Q6NUJ1 521 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ENPP7Q6UWV6 458 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 MARK2Q7KZI7 788 aaKnown RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 DET1Q7L5Y6 550 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 TAOK1Q7L7X3 1001 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 RD3Q7Z3Z2 195 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 TRIM74Q86UV6 250 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 NLRP8Q86W28 1048 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 TRAPPC5Q8IUR0 188 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 IGDCC3Q8IVU1 814 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 RBFAQ8N0V3 343 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 NXPE1Q8N323 547 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 MFSD2AQ8NA29 543 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 OR13H1Q8NG92 308 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 UHMK1Q8TAS1 419 aaKnown RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 FBF1Q8TES7 1133 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 BTN2A2Q8WVV5 523 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 RNF166Q96A37 237 aaPredicted RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 CENPTQ96BT3 561 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 MRRFQ96E11 262 aaKnown RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 LOXL4Q96JB6 756 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 FCRL3Q96P31 734 aaPredicted RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 VPS35Q96QK1 796 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 RUFY1Q96T51 708 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 AGAP2Q99490 1192 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 KLF6Q99612 283 aaPredicted RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 NUSAP1Q9BXS6 441 aaKnown RBP8.39□□□□□ -1.07
TRIM48-201ENST00000417545 SEMA4AQ9H3S1 761 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ARFGAP3Q9NP61 516 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 FAM86C1Q9NVL1 165 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ZDHHC3Q9NYG2 299 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 PLXNB3Q9ULL4 1909 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 ABCA7Q8IZY2 2146 aa8.39□□□□□ -1.07
TRIM48-201ENST00000417545 TTC28Q96AY4 2481 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 UQCRHLA0A096LP55 91 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 ZCWPW2A0A1B0GU75 182 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 EXOC1LA0A1B0GW35 172 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 FADS2P1A8MWK0 482 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 E5RI56 91 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 QSOX1O00391 747 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 TP73O15350 636 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 GPR39O43194 453 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 VEGFDO43915 354 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 CDK14O94921 469 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 IVLP07476 585 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 UQCRHP07919 91 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 SYPP08247 313 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 FAM153BP0C7A2 387 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 OR56A5P0C7T3 313 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 MYBL2P10244 700 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 CTSEP14091 401 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 VCLP18206 1134 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 MPLP40238 635 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 NSG1P42857 185 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 SLC1A2P43004 574 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 CSNK1EP49674 416 aaKnown RBP8.38□□□□□ -1.07
TRIM48-201ENST00000417545 BLKP51451 505 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 SLC12A2P55011 1212 aa8.38□□□□□ -1.07
TRIM48-201ENST00000417545 EIF3BP55884 814 aaKnown RBP8.38□□□□□ -1.07
TRIM48-201ENST00000417545 XIAPP98170 497 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms