RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TPK1Q9H3S4 243 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 MRTO4Q9UKD2 239 aaKnown RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ANXA2P2A6NMY6 339 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ANXA2P07355 339 aaKnown RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 KDELR1P24390 212 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 PLD1Q13393 1074 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 CCDC58Q4VC31 144 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 C11orf65Q8NCR3 313 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 NUSAP1Q9BXS6 441 aaKnown RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 OXCT2Q9BYC2 517 aaPredicted RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 TREM1Q9NP99 234 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 SCN8AQ9UQD0 1980 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 CATP04040 527 aaKnown RBP12.83□□□□□ -0.36
COL6A3-206ENST00000409809 SREBF1P36956 1147 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ETV1P50549 477 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 TAS2R43P59537 309 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 GIT2Q14161 759 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 STXBP5Q5T5C0 1151 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 GLT6D1Q7Z4J2 308 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 TSPAN1O60635 241 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ABCB7O75027 752 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 ANXA8P13928 327 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 CDKL1Q00532 357 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 GOLM1Q8NBJ4 401 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 RXFP2Q8WXD0 754 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 GIMAP5Q96F15 307 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 IFNA21P01568 189 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 JCHAINP01591 159 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 EPHA3P29320 983 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 GATAD2BQ8WXI9 593 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 MASTLQ96GX5 879 aa12.83□□□□□ -0.36
COL6A3-206ENST00000409809 CLK3P49761 638 aaKnown RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 PTP4A2Q12974 167 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CTC1Q2NKJ3 1217 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF467Q7Z7K2 595 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 SLC22A16Q86VW1 577 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 OR5K1Q8NHB7 308 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 BHLHE41Q9C0J9 482 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 PRR12Q9ULL5 1215 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 PCDHB12Q9Y5F1 795 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 DISP2A7MBM2 1401 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 FAM189A1O60320 539 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CYP11A1P05108 521 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 RAB5CP51148 216 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 APLP1P51693 650 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CBWD6Q4V339 395 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CPTPQ5TA50 214 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 TCEAL6Q6IPX3 200 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 NXPE2Q96DL1 559 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 DMRTB1Q96MA1 342 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 OSBPL7Q9BZF2 842 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 POLR1EQ9GZS1 481 aaKnown RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 NT5MQ9NPB1 228 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 SNX15Q9NRS6 342 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 RAMP2O60895 175 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CAPN15O75808 1086 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CD36P16671 472 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ACOX1Q15067 660 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 WDR45BQ5MNZ6 344 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 KCNT2Q6UVM3 1135 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 MOB2Q70IA6 237 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 SAPCD2Q86UD0 394 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 LDHDQ86WU2 507 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ATAD1Q8NBU5 361 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 LRRC3Q9BY71 257 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 MARK1Q9P0L2 795 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 A0A087WZ62 844 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 STMND1H3BQB6 276 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ABRQ12979 859 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 MKRN4PQ13434 485 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF311Q5JNZ3 666 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ZDHHC20Q5W0Z9 365 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 OR5T2Q8NGG2 359 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ATP6AP2A0A1C7CYW4 349 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 TRIM3O75382 744 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 KRT33AO76009 404 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 TYMPP19971 482 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 MATN1P21941 496 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 PSEN1P49768 467 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF143P52747 638 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 THOP1P52888 689 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 SLC13A2Q13183 592 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 TMEM132BQ14DG7 1078 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 HLA-DQA1Q5Y7H0 255 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CHRDL2Q6WN34 429 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 EVPLQ92817 2033 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CYP4B1P13584 511 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 SLC1A2P43004 574 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 MAGEA6P43360 314 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 NCS1P62166 190 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 RASGEF1BQ0VAM2 473 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 MTM1Q13496 603 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 STARD3Q14849 445 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 RTL4Q6ZR62 310 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 IQCF2Q8IXL9 164 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 SLC37A3Q8NCC5 494 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CAMK1GQ96NX5 476 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 RBM22Q9NW64 420 aaKnown RBP eCLIP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 H3BM21 787 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms