RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TRAM1Q15629 374 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 KIAA0930Q6ICG6 404 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 GRHL2Q6ISB3 625 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ZC3H7AQ8IWR0 971 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FSTL5Q8N475 847 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 OR4A15Q8NGL6 344 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ADAMTS15Q8TE58 950 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 KCTD13Q8WZ19 329 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CREB3L1Q96BA8 519 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SLC22A4Q9H015 551 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TRIM39Q9HCM9 518 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ASAH2Q9NR71 780 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 HCN3Q9P1Z3 774 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TMED5Q9Y3A6 229 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PCDHGB5Q9Y5G0 923 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SPATA31C2B4DYI2 1134 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 XKRYO14609 159 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ANGPTL1O95841 491 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 VTNP04004 478 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TACSTD2P09758 323 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TPH1P17752 444 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CD86P42081 329 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ABL2P42684 1182 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 RFX3P48380 749 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 KHKP50053 298 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ATP4BP51164 291 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PLIN5Q00G26 463 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TMEM62Q0P6H9 643 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 RASGEF1BQ0VAM2 473 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FSTL1Q12841 308 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 DGCR6Q14129 220 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 NRF1Q16656 503 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 IFI44LQ53G44 452 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 IRF2BP2Q7Z5L9 587 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 FAM47BQ8NA70 645 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ACER1Q8TDN7 264 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 OSMRQ99650 979 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 ATXN3LQ9H3M9 355 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 TFB2MQ9H5Q4 396 aaKnown RBP6.07□□□□□ -1.44
SCN1A-203ENST00000409050 CDH7Q9ULB5 785 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 PDE10AQ9Y233 779 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 LYVE1Q9Y5Y7 322 aa6.07□□□□□ -1.44
SCN1A-203ENST00000409050 MCIDASD6RGH6 385 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 KCNK1O00180 336 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PEX11AO75192 247 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 STK16O75716 305 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 RECQL4O94761 1208 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 UPP2O95045 317 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CCNB2O95067 398 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PAPSS2O95340 614 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ENDOUP21128 410 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 KLRC2P26717 231 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 NDUFS1P28331 727 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SLC7A1P30825 629 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 IGFALSP35858 605 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SPAM1P38567 509 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PTGER3P43115 390 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MBTD1Q05BQ5 628 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SLC1A5Q15758 541 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 INTS5Q6P9B9 1019 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 GALNT15Q8N3T1 639 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 NIPA2Q8N8Q9 360 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF420Q8TAQ5 688 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 WFIKKN2Q8TEU8 576 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 KCTD4Q8WVF5 259 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 AKAP1Q92667 903 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 UFD1Q92890 307 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 BCL7BQ9BQE9 202 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SLC2A11Q9BYW1 496 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SLC29A3Q9BZD2 475 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SEMA6AQ9H2E6 1030 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CARD8Q9Y2G2 431 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PCDHGA11Q9Y5H2 935 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ADGRB2O60241 1585 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 BCL9LQ86UU0 1499 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FAM234BA2RU67 622 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FAM86B1E9PN63 330 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 WRBO00258 174 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 TNFRSF11BO00300 401 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 LSM1O15116 133 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SLC28A2O43868 658 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 RSL1D1O76021 490 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 TRBC1P01850 177 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PRNPP04156 253 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 FAM86B2P0C5J1 330 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 GJA8P48165 433 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 HCAR3P49019 387 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 MAPK10P53779 464 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 WNT3AP56704 352 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 STXBP1P61764 594 aaKnown RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PPP3R1P63098 170 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CBX2Q14781 532 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-203ENST00000409050 HEPACAMQ14CZ8 416 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 WDR48Q8TAF3 677 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 ZFAND2BQ8WV99 257 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 PLD4Q96BZ4 506 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 CPB2Q96IY4 423 aa6.06□□□□□ -1.44
SCN1A-203ENST00000409050 SEMA3CQ99985 751 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms