RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ICA1LQ8NDH6 482 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 TSTD1Q8NFU3 115 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 OR10G6Q8NH81 332 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 SHKBP1Q8TBC3 707 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 FGF13Q92913 245 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 ESAMQ96AP7 390 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 TLCD1Q96CP7 247 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 FERD3LQ96RJ6 166 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 SLC22A12Q96S37 553 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 IL12RB2Q99665 862 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 OR2AG1Q9H205 316 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 SPATS2LQ9NUQ6 558 aaKnown RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 PNPOQ9NVS9 261 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CORO1CQ9ULV4 474 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 PSMD13Q9UNM6 376 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 ACTL7AQ9Y615 435 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 LCHNA4D1U4 455 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CASQ2O14958 399 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 RGS14O43566 566 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 AKAP10O43572 662 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 EDF1O60869 148 aaKnown RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 LEFTY1O75610 366 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 RASGRP1O95267 797 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 OTCP00480 354 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 FYNP06241 537 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 LBPP18428 481 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 TGM3Q08188 693 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 FLOT2Q14254 428 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 LRRC36Q1X8D7 754 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 GPR33Q49SQ1 333 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 XKR6Q5GH73 641 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CEP68Q76N32 757 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 SCML4Q8N228 414 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 BEND7Q8N7W2 519 aaPredicted RBP9.04□□□□□ -0.96
LIG4-202ENST00000405925 P2RY13Q9BPV8 354 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CFHR5Q9BXR6 569 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 CRISPLD1Q9H336 500 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 SLC12A4Q9UP95 1085 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 LTBP1Q14766 1721 aa9.04□□□□□ -0.96
LIG4-202ENST00000405925 AZIN1O14977 448 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 MMP20O60882 483 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 AHSGP02765 367 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 IDSP22304 550 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 MPSTP25325 297 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 SCTRP47872 440 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 RFX3P48380 749 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 RPIAP49247 311 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 PRIM2P49643 509 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 NIPAL4Q0D2K0 466 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 PRKG2Q13237 762 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 PDE1CQ14123 709 aaPredicted RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 FBXW10Q5XX13 1052 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 TXNDC11Q6PKC3 985 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 PAQR3Q6TCH7 311 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 SLC43A3Q8NBI5 491 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 TRMT2BQ96GJ1 504 aaKnown RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 MRGPRX2Q96LB1 330 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 INTS10Q9NVR2 710 aaKnown RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 NEMP2A6NFY4 417 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 FAM159BA6NKW6 160 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 DRD4P21917 467 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 SLC6A4P31645 630 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 NAE1Q13564 534 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 ZNF776Q68DI1 518 aaPredicted RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 ANO7Q6IWH7 933 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 BNC2Q6ZN30 1099 aaPredicted RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 DEFB107AQ8IZN7 70 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 RNF148Q8N7C7 305 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 REPS1Q96D71 796 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 NUS1Q96E22 293 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 NECTIN4Q96NY8 510 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 CDCA3Q99618 268 aaPredicted RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 KLF16Q9BXK1 252 aaPredicted RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 PIF1Q9H611 641 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 CWH43Q9H720 699 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 RMND5AQ9H871 391 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 TMEM30AQ9NV96 361 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 CDH7Q9ULB5 785 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 SNX6Q9UNH7 406 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 SLC27A6Q9Y2P4 619 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 PSAT1Q9Y617 370 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 UBXN8O00124 270 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 EIF2S1P05198 315 aaKnown RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 HGFP14210 728 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 HSPA7P48741 367 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 ILF3Q12906 894 aaKnown RBP eCLIP9.03□□□□□ -0.96
LIG4-202ENST00000405925 MAD2L1Q13257 205 aaPredicted RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 QPCTQ16769 361 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 TCEAL5Q5H9L2 206 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 RALGPS1Q5JS13 557 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 RBM20Q5T481 1227 aaKnown RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 CUZD1Q86UP6 607 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 PARP9Q8IXQ6 854 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 BCL7CQ8WUZ0 217 aaPredicted RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 CLP1Q92989 425 aaKnown RBP9.03□□□□□ -0.96
LIG4-202ENST00000405925 FAM162AQ96A26 154 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 TMEM237Q96Q45 408 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 SIKE1Q9BRV8 207 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 TRMOQ9BU70 441 aa9.03□□□□□ -0.96
LIG4-202ENST00000405925 GATA5Q9BWX5 397 aaPredicted RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms