RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 ZNF350Q9GZX5 532 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 PCDHAC1Q9H158 963 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 CCDC177Q9NQR7 707 aaPredicted RBP11.79□□□□□ -0.52
SYNPO-202ENST00000394243 SEMA3GQ9NS98 782 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 DNAJC5BQ9UF47 199 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 SLC7A8Q9UHI5 535 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 HSPB11Q9Y547 144 aa11.79□□□□□ -0.52
SYNPO-202ENST00000394243 FGF10O15520 208 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 FUT4P22083 530 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 MAPK9P45984 424 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 PSEN1P49768 467 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 PTGES3Q15185 160 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 RBM48Q5RL73 367 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 CPTPQ5TA50 214 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM53Q6P2H8 277 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 PAOXQ6QHF9 649 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ZYG11AQ6WRX3 759 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ARMC10Q8N2F6 343 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TMEM168Q9H0V1 697 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 DCSTAMPQ9H295 470 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ILVBLA1L0T0 632 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 MAGEB3O15480 346 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 FOXN2P32314 431 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 PITPNAQ00169 270 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TPRG1LQ5T0D9 272 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 BPIFB1Q8TDL5 484 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 GAL3ST3Q96A11 431 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 PGLYRP2Q96PD5 576 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 IKZF2Q9UKS7 526 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SH3D21A4FU49 640 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SLC15A1P46059 708 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 MANFP55145 182 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ELMOD2Q8IZ81 293 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 NEK7Q8TDX7 302 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 KCNN2Q9H2S1 579 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 EDARQ9UNE0 448 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 CPSF4LA6NMK7 179 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ACOX3O15254 700 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 AKAP8O43823 692 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ACSL4O60488 711 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ERAL1O75616 437 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 RSL1D1O76021 490 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 NFE2Q16621 373 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ESRP1Q6NXG1 681 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SLC37A3Q8NCC5 494 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 MSANTD3Q96H12 275 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 GLT1D1Q96MS3 346 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF717Q9BY31 904 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF304Q9HCX3 659 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SUCOQ9UBS9 1254 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SEC14L3Q9UDX4 400 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 MAFFQ9ULX9 164 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TRBC1P01850 177 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 CYP2A6P11509 494 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 BDNFP23560 247 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TXNL4AP83876 142 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 INO80EQ8NBZ0 244 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 PHC3Q8NDX5 983 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 CEP76Q8TAP6 659 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 DNAJA4Q8WW22 397 aaPredicted RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 KAT2AQ92830 837 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 UFD1Q92890 307 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 GAD1Q99259 594 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 ASB7Q9H672 318 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SMPD4Q9NXE4 827 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 NCKAP1Q9Y2A7 1128 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 C5orf60A6NFR6 353 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SLC25A12O75746 678 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 CLPXO76031 633 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 NOL4O94818 638 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 GSTT2BP0CG30 244 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 HOXD10P28358 340 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 MAXP61244 160 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 NOMO3P69849 1222 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 MOGQ16653 247 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 SYT16Q17RD7 645 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 RAB12Q6IQ22 244 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 FRRS1Q6ZNA5 592 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 USP45Q70EL2 814 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TSEN15Q8WW01 171 aaKnown RBP11.78□□□□□ -0.52
SYNPO-202ENST00000394243 LMAN2LQ9H0V9 348 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TBCCD1Q9NVR7 557 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 PCDH10Q9P2E7 1040 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 NDOR1Q9UHB4 597 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 TESMINQ9Y4I5 508 aa11.78□□□□□ -0.52
SYNPO-202ENST00000394243 A0A088AWK7 358 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 POMCP01189 267 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 RB1P06400 928 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 DBIP07108 87 aaKnown RBP11.77□□□□□ -0.52
SYNPO-202ENST00000394243 CKMT2P17540 419 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 ZNF10P21506 573 aaPredicted RBP11.77□□□□□ -0.52
SYNPO-202ENST00000394243 TLX1P31314 330 aaPredicted RBP11.77□□□□□ -0.52
SYNPO-202ENST00000394243 ACADVLP49748 655 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 GDI2P50395 445 aaKnown RBP11.77□□□□□ -0.52
SYNPO-202ENST00000394243 NPTX1Q15818 432 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 ZBTB6Q15916 424 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 DCST1Q5T197 706 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 RNASEH2BQ5TBB1 312 aaKnown RBP11.77□□□□□ -0.52
SYNPO-202ENST00000394243 RBM12BQ8IXT5 1001 aaKnown RBP11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms