RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TTC30BQ8N4P2 665 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 NR1H4Q96RI1 486 aaPredicted RBP21.4■■□□□ 1.02
TRIM54-202ENST00000380075 SLC25A23Q9BV35 468 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 SARDHQ9UL12 918 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 RNF112Q9ULX5 631 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 PSMD13Q9UNM6 376 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 MED16Q9Y2X0 877 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 COL6A3P12111 3177 aa21.4■■□□□ 1.02
TRIM54-202ENST00000380075 STX16-NPEPL1H3BU86 382 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 STX16O14662 325 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 MC4RP32245 332 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 CDC16Q13042 620 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 KCNC3Q14003 757 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 FLOT2Q14254 428 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 PFKFB4Q16877 469 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 TXNDC11Q6PKC3 985 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 TMEM126BQ8IUX1 230 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 STK40Q8N2I9 435 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 CARNMT1Q8N4J0 409 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 DCAF4L2Q8NA75 395 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 EXT2Q93063 718 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 WBP2Q969T9 261 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 CDCA3Q99618 268 aaPredicted RBP21.39■■□□□ 1.02
TRIM54-202ENST00000380075 C19orf43Q9BQ61 176 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 VCXQ9H320 206 aa21.39■■□□□ 1.02
TRIM54-202ENST00000380075 MTF2Q9Y483 593 aaPredicted RBP21.39■■□□□ 1.02
TRIM54-202ENST00000380075 GFRA2O00451 464 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 AZIN1O14977 448 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 PEX1O43933 1283 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 CDK14O94921 469 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 OLFM2O95897 454 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 STX1BP61266 288 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 AP1S1P61966 158 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 SH3BP2P78314 561 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 PTPRNQ16849 979 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 SETMARQ53H47 684 aaPredicted RBP21.39■■□□□ 1.01
TRIM54-202ENST00000380075 HACD2Q6Y1H2 254 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 GK5Q6ZS86 529 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 FAM217AQ8IXS0 508 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 PLCD3Q8N3E9 789 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 FBXO39Q8N4B4 442 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 EFCAB3Q8N7B9 438 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 MIEF2Q96C03 454 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 BIRC8Q96P09 236 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 FEM1AQ9BSK4 669 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 C1QTNF3Q9BXJ4 246 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 KLHL4Q9C0H6 718 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 FKBPLQ9UIM3 349 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 OR51B4Q9Y5P0 310 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 INSL5Q9Y5Q6 135 aa21.39■■□□□ 1.01
TRIM54-202ENST00000380075 A6NHS1 94 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 H3BNX3 289 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 FZD6O60353 706 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 SNAP91O60641 907 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 SNRPB2P08579 225 aaKnown RBP21.38■■□□□ 1.01
TRIM54-202ENST00000380075 PRSS56P0CW18 603 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 RPL26P61254 145 aaKnown RBP21.38■■□□□ 1.01
TRIM54-202ENST00000380075 RHOAP61586 193 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 LCP2Q13094 533 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 MMEL1Q495T6 779 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 KANK2Q63ZY3 851 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 CLEC6AQ6EIG7 209 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 Q6ZNB5 142 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 TMEM150AQ86TG1 271 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 SPNS2Q8IVW8 549 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 EFHBQ8N7U6 833 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 KCNJ9Q92806 393 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 TMA16Q96EY4 203 aaKnown RBP21.38■■□□□ 1.01
TRIM54-202ENST00000380075 GPR21Q99679 349 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 MID1IP1Q9NPA3 183 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 SMPD4Q9NXE4 827 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 DNMT3BQ9UBC3 853 aaKnown RBP21.38■■□□□ 1.01
TRIM54-202ENST00000380075 TRMT6Q9UJA5 497 aaKnown RBP21.38■■□□□ 1.01
TRIM54-202ENST00000380075 FAM50BQ9Y247 325 aa21.38■■□□□ 1.01
TRIM54-202ENST00000380075 GOLGA8CPA6NN73 597 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 SUPT3HB4E1H0 165 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 TRIM38O00635 465 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 CFLARO15519 480 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 KLK8O60259 260 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 VPS4BO75351 444 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 SUPT3HO75486 399 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 BCAS2O75934 225 aaPredicted RBP21.37■■□□□ 1.01
TRIM54-202ENST00000380075 ESR1P03372 595 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 PTGER3P43115 390 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 CEACAM7Q14002 265 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 PPP1R3AQ16821 1122 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 AGKQ53H12 422 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 ANKS6Q68DC2 871 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 UGT3A1Q6NUS8 523 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 CYHR1Q6ZMK1 362 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 RNF111Q6ZNA4 994 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 EFL1Q7Z2Z2 1120 aaKnown RBP21.37■■□□□ 1.01
TRIM54-202ENST00000380075 KREMEN2Q8NCW0 462 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 NPAS2Q99743 824 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 MAGEE1Q9HCI5 957 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 PKP3Q9Y446 797 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 ASB3Q9Y575 518 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 DNAJC15Q9Y5T4 150 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 MAGEA13PA6NCF6 341 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 BBIP1A8MTZ0 92 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms