RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 FOXD2O60548 495 aaPredicted RBP6.51□□□□□ -1.37
SMC1A-202ENST00000375340 TSPAN19P0C672 248 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 PRKCHP24723 683 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 HERVK_113P63132 956 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 NCF4Q15080 339 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 PAGE2BQ5JRK9 111 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 SIRPB2Q5JXA9 342 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 DDI2Q5TDH0 399 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 POTEHQ6S545 545 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 DEF8Q6ZN54 512 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 LUZP2Q86TE4 346 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 TBC1D21Q8IYX1 336 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 CRYGNQ8WXF5 182 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 CENPNQ96H22 339 aaPredicted RBP6.51□□□□□ -1.37
SMC1A-202ENST00000375340 ERVK-6Q9BXR3 956 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 CNTN3Q9P232 1028 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 OAZ3Q9UMX2 235 aa6.51□□□□□ -1.37
SMC1A-202ENST00000375340 SBF2Q86WG5 1849 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 SMIM35A0A1B0GVV1 85 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ULK1O75385 1050 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ELK4P28324 431 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 PTPRCAPQ14761 206 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 AHSA2Q719I0 299 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ZNF598Q86UK7 904 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 OR10A6Q8NH74 314 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 PPP3R2Q96LZ3 170 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 CEP44Q9C0F1 390 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 C1orf21Q9H246 121 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 OSGEPL1Q9H4B0 414 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 USP29Q9HBJ7 922 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 DNAAF2Q9NVR5 837 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 VPS4AQ9UN37 437 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 SNX6Q9UNH7 406 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 A8MT66 165 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 FGF1P05230 155 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 HOXD10P28358 340 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ZNF135P52742 658 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 FBXW4P57775 412 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 SLC2A7Q6PXP3 512 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ZBTB2Q8N680 514 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 MYO19Q96H55 970 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 UROC1Q96N76 676 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 STRA6Q9BX79 667 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 CDV3Q9UKY7 258 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 KRT20P35900 424 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 HSPA7P48741 367 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TAS2R39P59534 338 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 KRR1Q13601 381 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ZNF284Q2VY69 593 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 SPANXN2Q5MJ10 180 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TP53INP2Q8IXH6 220 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 KLHL23Q8NBE8 558 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 PIK3C3Q8NEB9 887 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 OR13C4Q8NGS5 318 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ENKURQ8TC29 256 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 MYDGFQ969H8 173 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ASB9Q96DX5 294 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TDRD1Q9BXT4 1180 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TNKS2Q9H2K2 1166 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 SOX17Q9H6I2 414 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 CXorf21Q9HAI6 301 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 KCNK13Q9HB14 408 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 C11orf16Q9NQ32 467 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 CNTN6Q9UQ52 1028 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 FCF1Q9Y324 198 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 FAM220BPB1ANY3 271 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TAF4O00268 1085 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 AKR1A1P14550 325 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 LPOP22079 712 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 CYP2C18P33260 490 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 SLC26A3P40879 764 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 CBX3Q13185 183 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 NFE2Q16621 373 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TXNDC5Q8NBS9 432 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 CANT1Q8WVQ1 401 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 NHSL1Q5SYE7 1610 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 IRS2Q9Y4H2 1338 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 A0A0G2JLL6 359 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 GRIN3BO60391 1043 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 COL6A2P12110 1019 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 DAOAP59103 153 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 PLEKHG4Q58EX7 1191 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 PRRT2Q7Z6L0 340 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ZC3HC1Q86WB0 502 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TAMM41Q96BW9 452 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 PANX1Q96RD7 426 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 COQ7Q99807 217 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 COQ6Q9Y2Z9 468 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 RAI2Q9Y5P3 530 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 SLC25A14O95258 325 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 MED26O95402 600 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 GNA12Q03113 381 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 RNASE12Q5GAN4 147 aaKnown RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ATXN7L2Q5T6C5 722 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 FAM43BQ6ZT52 329 aaPredicted RBP6.5□□□□□ -1.37
SMC1A-202ENST00000375340 EPHX4Q8IUS5 362 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 STK40Q8N2I9 435 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 MTMR14Q8NCE2 650 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 ROPN1LQ96C74 230 aa6.5□□□□□ -1.37
SMC1A-202ENST00000375340 TMEM74Q96NL1 305 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms