RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CCDC154A6NI56 674 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 IRAK2O43187 625 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 KCNH1O95259 989 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 CYBBP04839 570 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 PRR35P0CG20 571 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 CDH1P12830 882 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 GSTM2P28161 218 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 GRIK2Q13002 908 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 EIF4EBP2Q13542 120 aaPredicted RBP21.02■□□□□ 0.96
UPF3A-202ENST00000375299 BTG3Q14201 252 aaPredicted RBP21.02■□□□□ 0.96
UPF3A-202ENST00000375299 CRY1Q16526 586 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 FXNQ16595 210 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 AFMIDQ63HM1 303 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 TMEM86AQ8N2M4 240 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 TMEM199Q8N511 208 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 IMP4Q96G21 291 aaKnown RBP21.02■□□□□ 0.96
UPF3A-202ENST00000375299 ATOH8Q96SQ7 321 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 NTN4Q9HB63 628 aa21.02■□□□□ 0.96
UPF3A-202ENST00000375299 SMIM35A0A1B0GVV1 85 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 MROH6A6NGR9 719 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 RSL1D1O76021 490 aaKnown RBP21.01■□□□□ 0.95
UPF3A-202ENST00000375299 C1RP00736 705 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 CLCQ05315 142 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 DUSP28Q4G0W2 176 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 BRMS1LQ5PSV4 323 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 ZNF549Q6P9A3 640 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 ZNF467Q7Z7K2 595 aaPredicted RBP21.01■□□□□ 0.95
UPF3A-202ENST00000375299 RHEBL1Q8TAI7 183 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 NSMCE2Q96MF7 247 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 CSNK1G1Q9HCP0 422 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 OSER1Q9NX31 292 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 CDH9Q9ULB4 789 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 KPNA4O00629 521 aaPredicted RBP21.01■□□□□ 0.95
UPF3A-202ENST00000375299 THRBP10828 461 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 CES1P23141 567 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 CRHBPP24387 322 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 CASP2P42575 452 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 PLA2G16P53816 162 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 TIAL1Q01085 375 aaKnown RBP eCLIP21.01■□□□□ 0.95
UPF3A-202ENST00000375299 LCP2Q13094 533 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 ARTNQ5T4W7 220 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 THAP5Q7Z6K1 395 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 OR6J1Q8NGC5 347 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 PABPC5Q96DU9 382 aaKnown RBP21.01■□□□□ 0.95
UPF3A-202ENST00000375299 INTS7Q9NVH2 962 aaKnown RBP21.01■□□□□ 0.95
UPF3A-202ENST00000375299 SLAMF8Q9P0V8 285 aa21.01■□□□□ 0.95
UPF3A-202ENST00000375299 A0A1B0GTL3 188 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 UPK1AO00322 258 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 CRCPO75575 148 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 ZNF37AP17032 561 aaPredicted RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 JAK1P23458 1154 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 CD86P42081 329 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 EMX2Q04743 252 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 SKIV2LQ15477 1246 aaKnown RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 TRIM16LQ309B1 348 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 TAF2Q6P1X5 1199 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 R3HCC1LQ7Z5L2 792 aaKnown RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 SPARTQ8N0X7 666 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 PDZD8Q8NEN9 1154 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 ABHD11Q8NFV4 315 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 GTF3C2Q8WUA4 911 aaPredicted RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 FCRL2Q96LA5 508 aaPredicted RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 ZFP42Q96MM3 310 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 ZNF347Q96SE7 839 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 TSPYL2Q9H2G4 693 aaPredicted RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 ADNPQ9H2P0 1102 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 TFB2MQ9H5Q4 396 aaKnown RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 NT5MQ9NPB1 228 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 HPS4Q9NQG7 708 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 SLC22A3O75751 556 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 ALPLP05186 524 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 ENO2P09104 434 aaPredicted RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 SLC2A3P11169 496 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 EEF1DP29692 281 aaKnown RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 OR4D2P58180 307 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 RPS3AP61247 264 aaKnown RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 UFM1P61960 85 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 GLYATQ6IB77 296 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 TMCO5AQ8N6Q1 288 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 RTL3Q8N8U3 475 aaKnown RBP21■□□□□ 0.95
UPF3A-202ENST00000375299 SLC22A17Q8WUG5 538 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 TMBIM1Q969X1 311 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 MYLPFQ96A32 169 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 PIF1Q9H611 641 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 MAGEL2Q9UJ55 1249 aa21■□□□□ 0.95
UPF3A-202ENST00000375299 DEAF1O75398 565 aaPredicted RBP20.99■□□□□ 0.95
UPF3A-202ENST00000375299 PRSS23O95084 383 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 OPRL1P41146 370 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 SUOXP51687 545 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 POLR2JP52435 117 aaKnown RBP20.99■□□□□ 0.95
UPF3A-202ENST00000375299 MAXP61244 160 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 ECT2LQ008S8 904 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 ITKQ08881 620 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 LRRC49Q8IUZ0 686 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 C8orf59Q8N0T1 100 aaPredicted RBP20.99■□□□□ 0.95
UPF3A-202ENST00000375299 CLEC4FQ8N1N0 589 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 DNAJB3Q8WWF6 145 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 TAMM41Q96BW9 452 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 BRINP2Q9C0B6 783 aa20.99■□□□□ 0.95
UPF3A-202ENST00000375299 POPDC3Q9HBV1 291 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms