RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ZNF567Q8N184 647 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 SLC37A2Q8TED4 501 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 HTR3CQ8WXA8 447 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 QKIQ96PU8 341 aaKnown RBP eCLIP21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 FCRL5Q96RD9 977 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 NUDT22Q9BRQ3 303 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 CPNE5Q9HCH3 593 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 KLHL8Q9P2G9 620 aaPredicted RBP21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 ACSL6Q9UKU0 697 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 ADGRG1Q9Y653 693 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 IGSF10Q6WRI0 2623 aa21.48■■□□□ 1.03
CCDC28B-201ENST00000373602 TRBV23OR9-2A0A075B6M9 112 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 IGHV1OR21-1A0A087WYE8 117 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 NVLO15381 856 aaKnown RBP21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 GRID2O43424 1007 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 SLC25A14O95258 325 aaPredicted RBP21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 EPOP01588 193 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 SLC4A1P02730 911 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 ACP5P13686 325 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 ZNF8P17098 575 aaPredicted RBP21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 BPIP17213 487 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 ITIH1P19827 911 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 CTNNA1P35221 906 aaKnown RBP21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 WNT3AP56704 352 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 COPS2P61201 443 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 CLN3Q13286 438 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 C16orf72Q14CZ0 275 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 PID1Q7Z2X4 250 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 GLYATL1Q969I3 302 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 HEMGNQ9BXL5 484 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 OR2AG1Q9H205 316 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 TRIM39Q9HCM9 518 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 KCNK4Q9NYG8 393 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 TBC1D29Q9UFV1 150 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 KCNK6Q9Y257 313 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 REXO2Q9Y3B8 237 aaKnown RBP21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 PCDHA3Q9Y5H8 950 aa21.47■■□□□ 1.03
CCDC28B-201ENST00000373602 IGHV5-10-1A0A0J9YXX1 117 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 A6NCN8 305 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 BTNL10A8MVZ5 291 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 GPR89AB7ZAQ6 455 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 APOC4-APOC2K7ER74 178 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 HGSO14964 777 aaPredicted RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 AURKAO14965 403 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 ATXN7O15265 892 aaPredicted RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 IPO7O95373 1038 aaKnown RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 APOC2P02655 101 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 GPR89BP0CG08 455 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 ETV5P41161 510 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 XRCC4Q13426 336 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 CHCHD2P9Q5T1J5 151 aaPredicted RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 ZNF648Q5T619 568 aaPredicted RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 NKAIN2Q5VXU1 208 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 IYDQ6PHW0 289 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 RAD9BQ6WBX8 426 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 SNRNP27Q8WVK2 155 aaKnown RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 OXNAD1Q96HP4 312 aaPredicted RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 MRGPRX2Q96LB1 330 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 TRABDQ9H4I3 376 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 ARFGAP3Q9NP61 516 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 SARS2Q9NP81 518 aaKnown RBP21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 TRHDEQ9UKU6 1024 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 EFR3BQ9Y2G0 817 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 DUSP10Q9Y6W6 482 aa21.46■■□□□ 1.03
CCDC28B-201ENST00000373602 AGRPO00253 132 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 CHUKO15111 745 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 HMGCLP35914 325 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 CLCNKAP51800 687 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 LIMK2P53671 638 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 GPLD1P80108 840 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 CFHR1Q03591 330 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 VAC14Q08AM6 782 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 MPP3Q13368 585 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 TRA2AQ13595 282 aaKnown RBP eCLIP21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 NOMO1Q15155 1222 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 SIRPB2Q5JXA9 342 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 ARHGAP40Q5TG30 622 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 ADGRG6Q86SQ4 1221 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 LSM14AQ8ND56 463 aaKnown RBP21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 OR4D9Q8NGE8 314 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 PLEKHG4BQ96PX9 1271 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 SLC38A3Q99624 504 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 DPYSL5Q9BPU6 564 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 HERPUD2Q9BSE4 406 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 LACRTQ9GZZ8 138 aa21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 AKAP7Q9P0M2 348 aaPredicted RBP21.45■■□□□ 1.02
CCDC28B-201ENST00000373602 F3P13726 295 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 SLC2A4P14672 509 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 CTNNA2P26232 953 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 CSF2RBP32927 897 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 NAP1L1P55209 391 aaKnown RBP21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 COL9A2Q14055 689 aaPredicted RBP21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 GAS2L3Q86XJ1 694 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 ZNF761Q86XN6 746 aaPredicted RBP21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 PHYKPLQ8IUZ5 450 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 TTC30BQ8N4P2 665 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 SLC25A41Q8N5S1 370 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 USP7Q93009 1102 aa21.44■■□□□ 1.02
CCDC28B-201ENST00000373602 CCDC74BQ96LY2 380 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms