RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TMEM8AQ9HCN3 771 aa8.61□□□□□ -1.03
SYNE1-206ENST00000367253 CHORDC1Q9UHD1 332 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-206ENST00000367253 SSU72P8A0A1W2PR75 194 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 POTEMA6NI47 508 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 KCNN4O15554 427 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ZBTB11O95625 1053 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 FGFR3P22607 806 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 DNAJB1P25685 340 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 PTGER2P43116 358 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 DSG2Q14126 1118 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 VWA2Q5GFL6 755 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 TPRG1Q6ZUI0 275 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 UBALD2Q8IYN6 164 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 FMR1NBQ8N0W7 255 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 CYP4Z2PQ8N1L4 340 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 FBXL18Q96ME1 805 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 BTBD9Q96Q07 612 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ADAM7Q9H2U9 754 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 A1CFQ9NQ94 594 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 CMTM6Q9NX76 183 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 TRPC4Q9UBN4 977 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 PTBP2Q9UKA9 531 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 TMEM98Q9Y2Y6 226 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 SEC24AO95486 1093 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 FAM153BP0C7A2 387 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ATP5A1P25705 553 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 FXR1P51114 621 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 BOP1Q14137 746 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 CRTC2Q53ET0 693 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 CATSPEREQ5SY80 951 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 KCNT2Q6UVM3 1135 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 MACC1Q6ZN28 852 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 SLFN11Q7Z7L1 901 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 WDR49Q8IV35 697 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 SLC7A5P1Q8MH63 180 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 FUKQ8N0W3 1084 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 POF1BQ8WVV4 589 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ING5Q8WYH8 240 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 BORCS5Q969J3 196 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 DPY30Q9C005 99 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ZNF576Q9H609 170 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 CYP4F12Q9HCS2 524 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 B3GAT2Q9NPZ5 323 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ENOPH1Q9UHY7 261 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 DDX3XO00571 662 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 DNAJB5O75953 348 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ATG7O95352 703 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 GLP2RO95838 553 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 FDFT1P37268 417 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ARHGAP8P85298 464 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 SQLEQ14534 574 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 LPIN1Q14693 890 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 SLC18A3Q16572 532 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 NIPAL1Q6NVV3 410 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 AAGABQ6PD74 315 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 RBM43Q6ZSC3 357 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 SNX20Q7Z614 316 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 C12orf40Q86WS4 652 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 LSMEM2Q8N112 164 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 DHRSXQ8N5I4 330 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 OR7A2PQ8NGA2 310 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ST7LQ8TDW4 575 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 MAFIPQ8WZ33 124 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 NUDT9Q9BW91 350 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 MARK1Q9P0L2 795 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 PHRF1Q9P1Y6 1649 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ZNF541Q9H0D2 1346 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 APBB3O95704 486 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 RAB3DO95716 219 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 PAHP00439 452 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 HLA-FP30511 346 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 SERPINB5P36952 375 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ETV3P41162 512 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 Q3ZCU0 254 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 DENND5AQ6IQ26 1287 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ABRAXAS1Q6UWZ7 409 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ILDR2Q71H61 639 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 NOA1Q8NC60 698 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 GOT1L1Q8NHS2 421 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 JSRP1Q96MG2 331 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 P2RY13Q9BPV8 354 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ALG2Q9H553 416 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 ACSS2Q9NR19 701 aa8.6□□□□□ -1.03
SYNE1-206ENST00000367253 RBM7Q9Y580 266 aaKnown RBP8.6□□□□□ -1.03
SYNE1-206ENST00000367253 CENPBD1B2RD01 187 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 OR7A10O76100 309 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 NPR3P17342 541 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 CTSOP43234 321 aaPredicted RBP8.59□□□□□ -1.03
SYNE1-206ENST00000367253 RAB2AP61019 212 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 COASYQ13057 564 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 NAB1Q13506 487 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 CAMK1Q14012 370 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 CYP51A1Q16850 503 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 WDR93Q6P2C0 686 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 LRP10Q7Z4F1 713 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 VN1R5Q7Z5H4 357 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 MTDHQ86UE4 582 aaKnown RBP8.59□□□□□ -1.03
SYNE1-206ENST00000367253 HHIPL1Q96JK4 782 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 FAM111AQ96PZ2 611 aa8.59□□□□□ -1.03
SYNE1-206ENST00000367253 RAB11FIP5Q9BXF6 653 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms