RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CALRP27797 417 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 CCNHP51946 323 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 SLC7A2P52569 658 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 INO80DQ53TQ3 878 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 C6orf10Q5SRN2 563 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 MFN1Q8IWA4 741 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 MARVELD2Q8N4S9 558 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 ZNF483Q8TF39 744 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 LRCH3Q96II8 777 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 GPATCH1Q9BRR8 931 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 FAM192AQ9GZU8 254 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 SDR39U1Q9NRG7 319 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 RAB26Q9ULW5 256 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 TIMM22Q9Y584 194 aa20.67■□□□□ 0.9
CCDC88B-203ENST00000359902 CAPN3P20807 821 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 PRDX3P30048 256 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 CHN2P52757 468 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 HK3P52790 923 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 IL2P60568 153 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 VPS26BQ4G0F5 336 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 TMEM150AQ86TG1 271 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 ST13P4Q8IZP2 240 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 ZNF225Q9UK10 706 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 PCTPQ9UKL6 214 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 NDUFAF1Q9Y375 327 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 PCDHB9Q9Y5E1 797 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 OR51B4Q9Y5P0 310 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 TCRBV3S1A0A5B6 114 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 FZD6O60353 706 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 VPS4BO75351 444 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 MATN4O95460 622 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 PRAMEF12O95522 483 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 PEX19P40855 299 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 SMAD3P84022 425 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 TWF1Q12792 350 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 TXNDC11Q6PKC3 985 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 DNAJB7Q7Z6W7 309 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 SYVN1Q86TM6 617 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 KCNJ9Q92806 393 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 SLCO4A1Q96BD0 722 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 EID2BQ96D98 161 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 LINGO1Q96FE5 620 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 SLC22A12Q96S37 553 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 HIPK3Q9H422 1215 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 PIDD1Q9HB75 910 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 IL17CQ9P0M4 197 aa20.66■□□□□ 0.9
CCDC88B-203ENST00000359902 ANAPC1Q9H1A4 1944 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 AP1G1O43747 822 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 CRCPO75575 148 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 SOD2P04179 222 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 MBL2P11226 248 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 CHRM3P20309 590 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 PTGER3P43115 390 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 ADARP55265 1226 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 NAA20P61599 178 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 PITRM1Q5JRX3 1037 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 UGT3A1Q6NUS8 523 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 TAS2R42Q7RTR8 314 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 RIN3Q8TB24 985 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 PIP4K2CQ8TBX8 421 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 DUS3LQ96G46 650 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 TSC22D3Q99576 134 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 GMPR2Q9P2T1 348 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 FCF1Q9Y324 198 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 C9JVG2 144 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 GPR39O43194 453 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 ESRRBO95718 433 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 PPP3CCP48454 512 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 RHOAP61586 193 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 AARS2Q5JTZ9 985 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 ATXN7L2Q5T6C5 722 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 CYP2R1Q6VVX0 501 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 GPSM1Q86YR5 675 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 CPNE9Q8IYJ1 553 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 HOPXQ9BPY8 73 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 HGH1Q9BTY7 390 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 Q9H521 79 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 SLC52A3Q9NQ40 469 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 UBAP1Q9NZ09 502 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 GPR45Q9Y5Y3 372 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 AP4B1Q9Y6B7 739 aa20.65■□□□□ 0.9
CCDC88B-203ENST00000359902 C15orf38-AP3S2A0A0A6YYH1 394 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 GREM1O60565 184 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ESR1P03372 595 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 PRR35P0CG20 571 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 IDO1P14902 403 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 DIO3P55073 304 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 VEPH1Q14D04 833 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 RPS6KA2Q15349 733 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 OGFOD2Q6N063 350 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ARPINQ7Z6K5 226 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 GALNT4Q8N4A0 578 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ADAMTS19Q8TE59 1207 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ESAMQ96AP7 390 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ALG14Q96F25 216 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 P2RY12Q9H244 342 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 IL1RL2Q9HB29 575 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 VPS51Q9UID3 782 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 ASB1Q9Y576 335 aa20.64■□□□□ 0.89
CCDC88B-203ENST00000359902 COMMD10Q9Y6G5 202 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms