RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CRADDP78560 199 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 FOLH1Q04609 750 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CYP4F3Q08477 520 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 TARBP2Q15633 366 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 GPR158Q5T848 1215 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 ZFPM1Q8IX07 1006 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SVOPLQ8N434 492 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 DNASE1L2Q92874 299 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SLC38A4Q969I6 547 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 PLD4Q96BZ4 506 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 PLEKHA1Q9HB21 404 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 TRMT13Q9NUP7 481 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 PIK3C2BO00750 1634 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CNTNAP1P78357 1384 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 TMEM150BA6NC51 233 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 ABLIM1O14639 778 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 FPGTO14772 594 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 NRP2O60462 931 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 KERAO60938 352 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 MATN4O95460 622 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 HOXA10P31260 410 aaPredicted RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 HSD17B2P37059 387 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 PRR5P85299 388 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 UBAP2LQ14157 1087 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 TTMPQ5BVD1 217 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CERCAMQ5T4B2 595 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 HECTD2Q5U5R9 776 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 QSOX2Q6ZRP7 698 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CHST9Q7L1S5 443 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 AKAP14Q86UN6 197 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 AMIGO1Q86WK6 493 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 KBTBD2Q8IY47 623 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SLC34A3Q8N130 599 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CCDC54Q8NEL0 328 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 OR52K2Q8NGK3 314 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 BHLHE41Q9C0J9 482 aaPredicted RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 CST11Q9H112 138 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CCDC59Q9P031 241 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 IKZF2Q9UKS7 526 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SYN3O14994 580 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SCELO95171 688 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 PAPSS2O95340 614 aaPredicted RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 IFNW1P05000 195 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SAGP10523 405 aaPredicted RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 PRKAR2AP13861 404 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 SELPP16109 830 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CD247P20963 164 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 CCNCP24863 283 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 POM121L1PQ3SYA9 428 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 ZACNQ401N2 412 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 DUPD1Q68J44 220 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 THOC7Q6I9Y2 204 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 TMPRSS11BQ86T26 416 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 OR5T3Q8NGG3 340 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 FAM81AQ8TBF8 368 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 EFHD2Q96C19 240 aaPredicted RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 FEM1CQ96JP0 617 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 PRICKLE1Q96MT3 831 aaPredicted RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 HIST1H2AAQ96QV6 131 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 AGO3Q9H9G7 860 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 NEUROD4Q9HD90 331 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SLC27A5Q9Y2P5 690 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 GRIP1Q9Y3R0 1128 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 HBS1LQ9Y450 684 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 AP4B1Q9Y6B7 739 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 MEGF6O75095 1541 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SLC30A4O14863 429 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 ADAMDEC1O15204 470 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 RGS10O43665 173 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 BUD23O43709 281 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 LRATO95237 230 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 PGM3O95394 542 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 NDST3O95803 873 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 C8GP07360 202 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 BPGMP07738 259 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 GSTT2BP0CG30 244 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 NT5EP21589 574 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 NR4A1P22736 598 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 IGFBP5P24593 272 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 ATP5A1P25705 553 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 IL12BP29460 328 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 PSMD8P48556 350 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 KHKP50053 298 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SLC7A2P52569 658 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 ATXN1P54253 815 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 AP1S1P61966 158 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 SNAPC1Q16533 368 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 KCTD21Q4G0X4 260 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 ZNF311Q5JNZ3 666 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 DCST1Q5T197 706 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.43□□□□□ -1.38
UPF2-201ENST00000356352 RNASEH2BQ5TBB1 312 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 DNAAF5Q86Y56 855 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 RIPOR3Q96MK2 946 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 TBC1D10AQ9BXI6 508 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 GBA3Q9H227 469 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 TRIM39Q9HCM9 518 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 DDX4Q9NQI0 724 aaKnown RBP6.43□□□□□ -1.38
UPF2-201ENST00000356352 RAB26Q9ULW5 256 aa6.43□□□□□ -1.38
UPF2-201ENST00000356352 MEMO1Q9Y316 297 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms