RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 TMEM52Q8NDY8 209 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 CADM4Q8NFZ8 388 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 FBXO25Q8TCJ0 367 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 FBXO32Q969P5 355 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 HDAC11Q96DB2 347 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 OTUB2Q96DC9 234 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 LRRC39Q96DD0 335 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 SLC39A13Q96H72 371 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 EAF1Q96JC9 268 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-201ENST00000355766 ACOX2Q99424 681 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 KLC2Q9H0B6 622 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 STMN4Q9H169 189 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-201ENST00000355766 CATSPERBQ9H7T0 1116 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 AP5S1Q9NUS5 200 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS13A-201ENST00000355766 SMPD4Q9NXE4 827 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 WSB2Q9NYS7 404 aaPredicted RBP7.03□□□□□ -1.28
VPS13A-201ENST00000355766 TRPM5Q9NZQ8 1165 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 CWC15Q9P013 229 aaKnown RBP7.03□□□□□ -1.28
VPS13A-201ENST00000355766 USP36Q9P275 1121 aaKnown RBP7.03□□□□□ -1.28
VPS13A-201ENST00000355766 CFAP97Q9P2B7 532 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 TBC1D14Q9P2M4 693 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 DEC1Q9P2X7 70 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 SLC12A6Q9UHW9 1150 aa7.03□□□□□ -1.28
VPS13A-201ENST00000355766 IGLV3-10A0A075B6K4 115 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 A0A1B0GVT2 93 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 E2F8A0AVK6 867 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 FAM170AA1A519 330 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 ZNF840PA6NDX5 716 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 E7ESA3 106 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 AP3B1O00203 1094 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PCDHGA12O60330 932 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 IVLP07476 585 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 C6P13671 934 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PECAM1P16284 738 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PRKCAP17252 672 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TPSB2P20231 275 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 HSD17B3P37058 310 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 FDFT1P37268 417 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 IL12RB1P42701 662 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 KCNJ1P48048 391 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PLTPP55058 493 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 CLDN6P56747 220 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PPIDQ08752 370 aaKnown RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 GALNT2Q10471 571 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 NME3Q13232 169 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 LAPTM5Q13571 262 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TPSAB1Q15661 275 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 CA9Q16790 459 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 INAVAQ3KP66 663 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 C5orf22Q49AR2 442 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 IZUMO3Q5VZ72 239 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 DENND2CQ68D51 928 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 CRTC3Q6UUV7 619 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 UNC45BQ8IWX7 931 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 RIBC1Q8N443 379 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 MCUQ8NE86 351 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 SCAMP5Q8TAC9 235 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 MZB1Q8WU39 189 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TFB1MQ8WVM0 346 aaKnown RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TBC1D31Q96DN5 1066 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 ERLEC1Q96DZ1 483 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TOE1Q96GM8 510 aaKnown RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 BTN2A3PQ96KV6 586 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 SPATA13Q96N96 652 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TSGA13Q96PP4 275 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 GPR174Q9BXC1 333 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 ROPN1BQ9BZX4 212 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 SEMA4CQ9C0C4 833 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 RNF38Q9H0F5 515 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TKTL2Q9H0I9 626 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 DPH5Q9H2P9 285 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 ROPN1Q9HAT0 212 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 HAUS2Q9NVX0 235 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 DTLQ9NZJ0 730 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 FTSJ1Q9UET6 329 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 OR12D3Q9UGF7 316 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 ANAPC5Q9UJX4 755 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 TRHDEQ9UKU6 1024 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 NEU3Q9UQ49 428 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 SNX24Q9Y343 169 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PCDHGA1Q9Y5H4 931 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 ATMQ13315 3056 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PTPRQQ9UMZ3 2332 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PTPN13Q12923 2485 aa7.02□□□□□ -1.29
VPS13A-201ENST00000355766 UBR5O95071 2799 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-201ENST00000355766 PI4KAP42356 2102 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 ASXL3Q9C0F0 2248 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 CXorf51AA0A1B0GTR3 108 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 A0A1W2PQH9 124 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 HMGB1P1B2RPK0 211 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 TRIM24O15164 1050 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 SLC28A2O43868 658 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 RFPL3O75679 317 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 TTC4O95801 387 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 NTRK1P04629 796 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 GSTA2P09210 222 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 MBL2P11226 248 aaPredicted RBP7.01□□□□□ -1.29
VPS13A-201ENST00000355766 MLNP12872 115 aa7.01□□□□□ -1.29
VPS13A-201ENST00000355766 JUPP14923 745 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms