RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 FNIP1Q8TF40 1166 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 CPA5Q8WXQ8 436 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 RNF166Q96A37 237 aaPredicted RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 OR2M4Q96R27 311 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 FRMD8Q9BZ67 464 aaPredicted RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 STN1Q9H668 368 aaKnown RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 B4GALT6Q9UBX8 382 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 MAP4K5Q9Y4K4 846 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 ST14Q9Y5Y6 855 aa11.13□□□□□ -0.63
RTN3-204ENST00000354497 SPTBN1Q01082 2364 aaKnown RBP11.13□□□□□ -0.63
RTN3-204ENST00000354497 H3BQF6 201 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 J3KR12 359 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 FGFR1OPO95684 399 aaKnown RBP11.12□□□□□ -0.63
RTN3-204ENST00000354497 PON1P27169 355 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 CASP14P31944 242 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 PRSS12P56730 875 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 YBEYP58557 167 aaPredicted RBP11.12□□□□□ -0.63
RTN3-204ENST00000354497 POLR2LP62875 67 aaKnown RBP11.12□□□□□ -0.63
RTN3-204ENST00000354497 CDK3Q00526 305 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 PAK1Q13153 545 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 MAP7Q14244 749 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 IQCB1Q15051 598 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 LONRF2Q1L5Z9 754 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 PARP15Q460N3 678 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 NAA35Q5VZE5 725 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 AFMIDQ63HM1 303 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 ARHGAP22Q7Z5H3 698 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 RASGRP3Q8IV61 690 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 FAM172AQ8WUF8 416 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 CELF6Q96J87 481 aaKnown RBP11.12□□□□□ -0.63
RTN3-204ENST00000354497 CINPQ9BW66 212 aaPredicted RBP11.12□□□□□ -0.63
RTN3-204ENST00000354497 TEX101Q9BY14 249 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 SLC29A3Q9BZD2 475 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 TMEM98Q9Y2Y6 226 aa11.12□□□□□ -0.63
RTN3-204ENST00000354497 ANKRD17O75179 2603 aaKnown RBP11.12□□□□□ -0.63
RTN3-204ENST00000354497 TCP11X1B4DZS4 312 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 GADD45BO75293 160 aaPredicted RBP11.11□□□□□ -0.63
RTN3-204ENST00000354497 PALMO75781 387 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 KIAA0754O94854 1291 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 EZRP15311 586 aaKnown RBP11.11□□□□□ -0.63
RTN3-204ENST00000354497 CYP11B1P15538 503 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 CDH5P33151 784 aaPredicted RBP11.11□□□□□ -0.63
RTN3-204ENST00000354497 ETV3P41162 512 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 HHEXQ03014 270 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 IFFO1Q0D2I5 559 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 CHAF1BQ13112 559 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 INPP5JQ15735 1006 aaPredicted RBP11.11□□□□□ -0.63
RTN3-204ENST00000354497 CNGA3Q16281 694 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 SCYL2Q6P3W7 929 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 WDR74Q6RFH5 385 aaPredicted RBP11.11□□□□□ -0.63
RTN3-204ENST00000354497 TICAM1Q8IUC6 712 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 TSEN2Q8NCE0 465 aaKnown RBP11.11□□□□□ -0.63
RTN3-204ENST00000354497 JOSD2Q8TAC2 188 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 COQ10AQ96MF6 247 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 SLC25A23Q9BV35 468 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 TRIM55Q9BYV6 548 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 CATSPERBQ9H7T0 1116 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 KIAA1468Q9P260 1216 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 PDP2Q9P2J9 529 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 LNPEPQ9UIQ6 1025 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 KCND3Q9UK17 655 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 FAM169AQ9Y6X4 670 aa11.11□□□□□ -0.63
RTN3-204ENST00000354497 CREG1O75629 220 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 LSM8O95777 96 aaKnown RBP11.1□□□□□ -0.63
RTN3-204ENST00000354497 MMEP08473 750 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 CCNYL3P0C7X3 344 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 GPR1P46091 355 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 SEPHS1P49903 392 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 HHATQ5VTY9 493 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 C1QL3Q5VWW1 255 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 CPZQ66K79 652 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 DNAJC14Q6Y2X3 702 aaPredicted RBP11.1□□□□□ -0.63
RTN3-204ENST00000354497 SPATA21Q7Z572 469 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 SLFN11Q7Z7L1 901 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 GALNT13Q8IUC8 556 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 FAM71AQ8IYT1 594 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 MOCOSQ96EN8 888 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 RMDN2Q96LZ7 410 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 TRIM5Q9C035 493 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 ZNF768Q9H5H4 540 aaKnown RBP11.1□□□□□ -0.63
RTN3-204ENST00000354497 SIX2Q9NPC8 291 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 SLAMF7Q9NQ25 335 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 ERRFI1Q9UJM3 462 aaPredicted RBP11.1□□□□□ -0.63
RTN3-204ENST00000354497 ZNF232Q9UNY5 417 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 SLC17A4Q9Y2C5 497 aa11.1□□□□□ -0.63
RTN3-204ENST00000354497 TTC24A2A3L6 582 aaPredicted RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 ARGFXA6NJG6 315 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SNX2O60749 519 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 PRAMEF11O60813 436 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 RASSF9O75901 435 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 NDUFA10O95299 355 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ASMTLO95671 621 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 EML2O95834 649 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 VIPR1P32241 457 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 GCKP35557 465 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 MTIF2P46199 727 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 FASLGP48023 281 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SCNN1BP51168 640 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 CCL11P51671 97 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 HDAC4P56524 1084 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms