RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ANGPT2O15123 496 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 SNAP91O60641 907 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 TMCC1O94876 653 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 C1RP00736 705 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 PRDX3P30048 256 aaKnown RBP21.63■■□□□ 1.05
SHMT1-202ENST00000352886 ALDH7A1P49419 539 aaKnown RBP21.63■■□□□ 1.05
SHMT1-202ENST00000352886 GK3PQ14409 553 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 RPS6KA2Q15349 733 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 CTSL3PQ5NE16 218 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 SPATA16Q9BXB7 569 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 SDR39U1Q9NRG7 319 aaPredicted RBP21.63■■□□□ 1.05
SHMT1-202ENST00000352886 TRMT6Q9UJA5 497 aaKnown RBP21.63■■□□□ 1.05
SHMT1-202ENST00000352886 NDUFAF1Q9Y375 327 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 C2orf78A6NCI8 922 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 STX7O15400 261 aaKnown RBP21.63■■□□□ 1.05
SHMT1-202ENST00000352886 TSPAN12O95859 305 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 CD160O95971 181 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 HSPA13P48723 471 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 DHFR2Q86XF0 187 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 GPATCH1Q9BRR8 931 aaKnown RBP21.63■■□□□ 1.05
SHMT1-202ENST00000352886 SNX13Q9Y5W8 968 aa21.63■■□□□ 1.05
SHMT1-202ENST00000352886 ANAPC1Q9H1A4 1944 aa21.62■■□□□ 1.05
SHMT1-202ENST00000352886 PFDN6O15212 129 aa21.62■■□□□ 1.05
SHMT1-202ENST00000352886 ZNF26P17031 533 aaPredicted RBP21.62■■□□□ 1.05
SHMT1-202ENST00000352886 SLC7A1P30825 629 aa21.62■■□□□ 1.05
SHMT1-202ENST00000352886 NOGQ13253 232 aa21.62■■□□□ 1.05
SHMT1-202ENST00000352886 EEF1AKMT1Q8WVE0 214 aa21.62■■□□□ 1.05
SHMT1-202ENST00000352886 PBXIP1Q96AQ6 731 aa21.62■■□□□ 1.05
SHMT1-202ENST00000352886 CNOT11Q9UKZ1 510 aaKnown RBP21.62■■□□□ 1.05
SHMT1-202ENST00000352886 NME4O00746 187 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 STX16O14662 325 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 SCAMP3O14828 347 aaKnown RBP21.61■■□□□ 1.05
SHMT1-202ENST00000352886 MATN4O95460 622 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 STAMBPO95630 424 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 SMIM18P0DKX4 95 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 HSPA8P11142 646 aaKnown RBP21.61■■□□□ 1.05
SHMT1-202ENST00000352886 DIO3P55073 304 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 PLD1Q13393 1074 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 NRF1Q16656 503 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 CNPY1Q3B7I2 92 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 KIAA1841Q6NSI8 718 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 CD200R1Q8TD46 325 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 ESAMQ96AP7 390 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 LINGO1Q96FE5 620 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 SCLYQ96I15 445 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 SLC45A3Q96JT2 553 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 HOPXQ9BPY8 73 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-202ENST00000352886 VN1R3Q9BXE9 311 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 SMPD4Q9NXE4 827 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 PCTPQ9UKL6 214 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 GPR39O43194 453 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 KLK8O60259 260 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 PGM3O95394 542 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 IDO1P14902 403 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 CHRM3P20309 590 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 TWF1Q12792 350 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 UGT3A1Q6NUS8 523 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 SYVN1Q86TM6 617 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 DUS3LQ96G46 650 aaKnown RBP21.61■■□□□ 1.05
SHMT1-202ENST00000352886 TANC1Q9C0D5 1861 aa21.61■■□□□ 1.05
SHMT1-202ENST00000352886 VPS4BO75351 444 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 PABPC4LP0CB38 370 aaKnown RBP21.6■■□□□ 1.05
SHMT1-202ENST00000352886 GRIA3P42263 894 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 HK3P52790 923 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 IL2P60568 153 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 CAPRIN1Q14444 709 aaKnown RBP21.6■■□□□ 1.05
SHMT1-202ENST00000352886 TAF12Q16514 161 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 NCEH1Q6PIU2 408 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 TXNDC11Q6PKC3 985 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 CPNE9Q8IYJ1 553 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 GALNT15Q8N3T1 639 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 CLSTN3Q9BQT9 956 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 HGH1Q9BTY7 390 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 C1QTNF3Q9BXJ4 246 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 KLF16Q9BXK1 252 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-202ENST00000352886 COQ10BQ9H8M1 238 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 SARS2Q9NP81 518 aaKnown RBP21.6■■□□□ 1.05
SHMT1-202ENST00000352886 ABCD2Q9UBJ2 740 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 AFF4Q9UHB7 1163 aaKnown RBP21.6■■□□□ 1.05
SHMT1-202ENST00000352886 ZNF225Q9UK10 706 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 APPL1Q9UKG1 709 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 BACE2Q9Y5Z0 518 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 ZNF839A8K0R7 811 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 E5RI56 91 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 ESRRBO95718 433 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 ATP6V1B2P21281 511 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 RBBP7Q16576 425 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 MTX3Q5HYI7 312 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 TAS2R42Q7RTR8 314 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 SATL1Q86VE3 508 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 MFN1Q8IWA4 741 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 TTC30BQ8N4P2 665 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 CNOT6Q9ULM6 557 aaKnown RBP21.6■■□□□ 1.05
SHMT1-202ENST00000352886 GPR45Q9Y5Y3 372 aa21.6■■□□□ 1.05
SHMT1-202ENST00000352886 H0Y626 953 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 FXYD1O00168 92 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 SNX2O60749 519 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 MLYCDO95822 493 aa21.59■■□□□ 1.05
SHMT1-202ENST00000352886 MZF1P28698 734 aaPredicted RBP21.59■■□□□ 1.05
SHMT1-202ENST00000352886 CLCN4P51793 760 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms