RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 RNASEH1O60930 286 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 FGF3P11487 239 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 POLR2EP19388 210 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 PMLP29590 882 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 SERPINA4P29622 427 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 CTSOP43234 321 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 KPNA2P52292 529 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 MTTPP55157 894 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 ABCE1P61221 599 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 RAD51Q06609 339 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 UBAP2LQ14157 1087 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 PCLAFQ15004 111 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 MYLK3Q32MK0 819 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 ZNF789Q5FWF6 425 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 RARS2Q5T160 578 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 OGFRL1Q5TC84 451 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 C22orf39Q6P5X5 142 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 KIAA0907Q7Z7F0 614 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 KBTBD6Q86V97 674 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 CEP97Q8IW35 865 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 RYBPQ8N488 228 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 TTC30BQ8N4P2 665 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 PAF1Q8N7H5 531 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 FBXO27Q8NI29 283 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 DLG3Q92796 817 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 HIC2Q96JB3 615 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 CLPTM1LQ96KA5 538 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 C19orf43Q9BQ61 176 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 TNKS2Q9H2K2 1166 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 DUS2Q9NX74 493 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 MARCOQ9UEW3 520 aaPredicted RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 PADI4Q9UM07 663 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 VPS9D1Q9Y2B5 631 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 PKP3Q9Y446 797 aa12.76□□□□□ -0.37
CLK3-201ENST00000345005 ZNF106Q9H2Y7 1883 aaKnown RBP12.76□□□□□ -0.37
CLK3-201ENST00000345005 PRRC2BQ5JSZ5 2229 aaKnown RBP12.75□□□□□ -0.37
CLK3-201ENST00000345005 H7C0S8 307 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 MAP3K13O43283 966 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 FSHRP23945 695 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 GMPRP36959 345 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 STK19P49842 368 aaPredicted RBP12.75□□□□□ -0.37
CLK3-201ENST00000345005 IDH3AP50213 366 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 STC1P52823 247 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 SLC25A3Q00325 362 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 CCNIQ14094 377 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 DHCR24Q15392 516 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 TYSND1Q2T9J0 566 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 CARD16Q5EG05 197 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 HABP4Q5JVS0 413 aaKnown RBP12.75□□□□□ -0.37
CLK3-201ENST00000345005 RBM20Q5T481 1227 aaKnown RBP12.75□□□□□ -0.37
CLK3-201ENST00000345005 HECTD2Q5U5R9 776 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 FAM45BPQ6NSW5 357 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 CHRDL2Q6WN34 429 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 AHI1Q8N157 1196 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 OR6K2Q8NGY2 324 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 FAM45AQ8TCE6 357 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 OSCP1Q8WVF1 389 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 CPEB1Q9BZB8 566 aaKnown RBP12.75□□□□□ -0.37
CLK3-201ENST00000345005 GPR63Q9BZJ6 419 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 PRO3102Q9H379 93 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 MRPL40Q9NQ50 206 aaKnown RBP12.75□□□□□ -0.37
CLK3-201ENST00000345005 FBXO10Q9UK96 956 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 POMPQ9Y244 141 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 ZNF711Q9Y462 761 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 PCDHGA4Q9Y5G9 962 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 BPTFQ12830 3046 aa12.75□□□□□ -0.37
CLK3-201ENST00000345005 PIGNO95427 931 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 POP4O95707 220 aaKnown RBP12.74□□□□□ -0.37
CLK3-201ENST00000345005 ADH1CP00326 375 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 CCDC166P0CW27 439 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 RALBP11234 206 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 KCNA4P22459 653 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 HMGCLP35914 325 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 TMED1Q13445 227 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 TRIP10Q15642 601 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 LDB1Q86U70 411 aaPredicted RBP12.74□□□□□ -0.37
CLK3-201ENST00000345005 ADIPOR2Q86V24 386 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 C10orf107Q8IVU9 208 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 PLPP6Q8IY26 295 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 CENPLQ8N0S6 344 aaPredicted RBP12.74□□□□□ -0.37
CLK3-201ENST00000345005 ADCY4Q8NFM4 1077 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 VN1R2Q8NFZ6 395 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 KCTD4Q8WVF5 259 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 PYDC1Q8WXC3 89 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 SMARCD2Q92925 531 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 SCYL1Q96KG9 808 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 SMIM14Q96QK8 99 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 EBF4Q9BQW3 602 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 MRPS26Q9BYN8 205 aaKnown RBP12.74□□□□□ -0.37
CLK3-201ENST00000345005 POLR3BQ9NW08 1133 aaPredicted RBP12.74□□□□□ -0.37
CLK3-201ENST00000345005 DTNAQ9Y4J8 743 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 A0A0J9YYE9 177 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 SLCO1B7G3V0H7 640 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 H0YJX3 145 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 NDUFS3O75489 264 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 TNFAIP8O95379 198 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 TRBC1P01850 177 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 SLC4A1P02730 911 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 ADH5P11766 374 aa12.74□□□□□ -0.37
CLK3-201ENST00000345005 COX4I1P13073 169 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms