RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TMEM237Q96Q45 408 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 SHCBP1LQ9BZQ2 653 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 DERL2Q9GZP9 239 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 ILKAPQ9H0C8 392 aaPredicted RBP13.29□□□□□ -0.28
HMGB1-202ENST00000339872 CDH19Q9H159 772 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 NCKIPSDQ9NZQ3 722 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 PCDHB1Q9Y5F3 818 aa13.29□□□□□ -0.28
HMGB1-202ENST00000339872 TSPAN11A1L157 253 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 TBX10O75333 385 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PSMC3P17980 439 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 XPAP23025 273 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-202ENST00000339872 VIPR1P32241 457 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PTPN5P54829 565 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 DLX2Q07687 328 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-202ENST00000339872 EIF4HQ15056 248 aaKnown RBP13.28□□□□□ -0.28
HMGB1-202ENST00000339872 GPR33Q49SQ1 333 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 ZNF805Q5CZA5 627 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 LYPLAL1Q5VWZ2 237 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PIWIL4Q7Z3Z4 852 aaKnown RBP13.28□□□□□ -0.28
HMGB1-202ENST00000339872 MAVSQ7Z434 540 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 SLC22A9Q8IVM8 553 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 NKAPQ8N5F7 415 aaKnown RBP13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PRR11Q96HE9 360 aaPredicted RBP13.28□□□□□ -0.28
HMGB1-202ENST00000339872 LRIG1Q96JA1 1093 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PCDH12Q9NPG4 1184 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 CD84Q9UIB8 345 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 GNPTGQ9UJJ9 305 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 RAP2CQ9Y3L5 183 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 CAPN7Q9Y6W3 813 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 DENND4AQ7Z401 1863 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 NPHS1O60500 1241 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 SMIM24O75264 130 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 TIMP2P16035 220 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 ZNF30P17039 623 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 CD9P21926 228 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 SPINT3P49223 89 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 NCALDP61601 193 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 UGT3A1Q6NUS8 523 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PARM1Q6UWI2 310 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 TTC7BQ86TV6 843 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 CPNE9Q8IYJ1 553 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 NXPE1Q8N323 547 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 FGF14Q92915 247 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PLEKHG4BQ96PX9 1271 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 TFB2MQ9H5Q4 396 aaKnown RBP13.28□□□□□ -0.28
HMGB1-202ENST00000339872 PKD2L2Q9NZM6 624 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 SZT2Q5T011 3432 aa13.28□□□□□ -0.28
HMGB1-202ENST00000339872 TBC1D3BA6NDS4 549 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 C16orf96A6NNT2 1141 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 UBXN8O00124 270 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 KPNA3O00505 521 aaPredicted RBP13.27□□□□□ -0.28
HMGB1-202ENST00000339872 FCHO1O14526 889 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 LAMP2P13473 410 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 ALOX15P16050 662 aaPredicted RBP13.27□□□□□ -0.28
HMGB1-202ENST00000339872 RPS3P23396 243 aaKnown RBP eCLIP13.27□□□□□ -0.289e-18■■□□□ 12.1
HMGB1-202ENST00000339872 NFKBIAP25963 317 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 TARSP26639 723 aaKnown RBP13.27□□□□□ -0.28
HMGB1-202ENST00000339872 GJA4P35212 333 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 OPRD1P41143 372 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 SKIV2L2P42285 1042 aaKnown RBP13.27□□□□□ -0.28
HMGB1-202ENST00000339872 CLCN7P51798 805 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 ATP6V0D1P61421 351 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 ZNF234Q14588 700 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 HNRNPA1L2Q32P51 320 aaKnown RBP13.27□□□□□ -0.28
HMGB1-202ENST00000339872 ATP13A5Q4VNC0 1218 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 LSMEM2Q8N112 164 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 PHTF2Q8N3S3 785 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 CLDN19Q8N6F1 224 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 RHEBL1Q8TAI7 183 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 LINGO1Q96FE5 620 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 NMUR2Q9GZQ4 415 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 S1PR5Q9H228 398 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 STN1Q9H668 368 aaKnown RBP13.27□□□□□ -0.28
HMGB1-202ENST00000339872 TXLNGQ9NUQ3 528 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 DNAJC28Q9NX36 388 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 CLDND1Q9NY35 253 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 RNF112Q9ULX5 631 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 PRSS21Q9Y6M0 314 aa13.27□□□□□ -0.28
HMGB1-202ENST00000339872 PLXNA2O75051 1894 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 EDDM13A0A1B0GTR0 161 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 NPEPPSL1A6NEC2 478 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 BTN3A1O00481 513 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 ZNF195O14628 629 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 DIAPH2O60879 1101 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 ITGB6P18564 788 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 GDI1P31150 447 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 BMP8BP34820 402 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 IL2P60568 153 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 PRKAA1Q13131 559 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 TSNQ15631 228 aaKnown RBP13.27□□□□□ -0.29
HMGB1-202ENST00000339872 VWA5B1Q5TIE3 1220 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 ZDHHC20Q5W0Z9 365 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 SERPINA13PQ6UXR4 307 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 RPS27LQ71UM5 84 aaKnown RBP13.27□□□□□ -0.29
HMGB1-202ENST00000339872 PARS2Q7L3T8 475 aaKnown RBP13.27□□□□□ -0.29
HMGB1-202ENST00000339872 EEF1AKMT1Q8WVE0 214 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 KIAA1191Q96A73 305 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 ELSPBP1Q96BH3 223 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 RIPOR3Q96MK2 946 aa13.27□□□□□ -0.29
HMGB1-202ENST00000339872 ATOH8Q96SQ7 321 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms