RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LCA5Q86VQ0 697 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 SLC44A2Q8IWA5 706 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 SIX5Q8N196 739 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 CPXM2Q8N436 756 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 LINC01465Q8N7H1 131 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 MAPK15Q8TD08 544 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 AENQ8WTP8 325 aaKnown RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 CPT1BQ92523 772 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 NSL1Q96IY1 281 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 SLC32A1Q9H598 525 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 TEKT2Q9UIF3 430 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 MRTO4Q9UKD2 239 aaKnown RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 SEC24AO95486 1093 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 CTGFP29279 349 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 FOXM1Q08050 763 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 PDE1CQ14123 709 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 C1orf53Q5VUE5 145 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 KIAA0930Q6ICG6 404 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 MDM1Q8TC05 714 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 PIGKQ92643 395 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 GPR21Q99679 349 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 CCDC154A6NI56 674 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 ZSCAN9O15535 394 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 ULK1O75385 1050 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 LEFTY1O75610 366 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 PRKCGP05129 697 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 ACP5P13686 325 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 HOXA9P31269 272 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 MLLT3P42568 568 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 RPL14P50914 215 aaKnown RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 PTPN5P54829 565 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 LAYNQ6UX15 382 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 C14orf80Q86SX3 495 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 RAD51AP1Q96B01 352 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 PLEKHA8Q96JA3 519 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 ROGDIQ9GZN7 287 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 NOD2Q9HC29 1040 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 MARCH5Q9NX47 278 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 CNTN6Q9UQ52 1028 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 TCRBV9S1A1TA0A576 114 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 H0Y858 1186 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 PIM1P11309 404 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 NUDT1P36639 197 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 CAPZA2P47755 286 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 OVGP1Q12889 678 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 SLC1A5Q15758 541 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 INO80DQ53TQ3 878 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 C1orf220Q5T0J3 134 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 LRRC66Q68CR7 880 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 PM20D1Q6GTS8 502 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 IFNEQ86WN2 208 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 OR52K2Q8NGK3 314 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 KLF16Q9BXK1 252 aaPredicted RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 KLC4Q9NSK0 619 aa10.09□□□□□ -0.79
USP54-201ENST00000339859 DNMT3BQ9UBC3 853 aaKnown RBP10.09□□□□□ -0.79
USP54-201ENST00000339859 TTC36A6NLP5 189 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 FAM170BA6NMN3 283 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 GUCA1AP43080 201 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 CST6Q15828 149 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 ALG11Q2TAA5 492 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 AMZ1Q400G9 498 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 EMC10Q5UCC4 262 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 HTR3DQ70Z44 454 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 CNDP1Q96KN2 507 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 TCF7L2Q9NQB0 619 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 H2AFY2Q9P0M6 372 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 STON1Q9Y6Q2 735 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 FER1L6Q2WGJ9 1857 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 SLC35G6P0C7Q6 338 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 AGXTP21549 392 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 EEF1B2P24534 225 aaKnown RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 VARSP26640 1264 aaKnown RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 NMBRP28336 390 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 S100A3P33764 101 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 NUDT2P50583 147 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 GSCP56915 257 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 TDGQ13569 410 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 PIK3R6Q5UE93 754 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 MAFAQ8NHW3 353 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 RPLP0P6Q8NHW5 317 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 TMEM59LQ9UK28 342 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 ACTL7BQ9Y614 415 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 SCN9AQ15858 1988 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 A0A1W2PP55 124 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 ATP1B2P14415 290 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 STXBP1P61764 594 aaKnown RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 SULT1C3Q6IMI6 304 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 LYSMD3Q7Z3D4 306 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 TMPRSS11BQ86T26 416 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 TMPRSS6Q8IU80 811 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 ZNF555Q8NEP9 628 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 OTULINQ96BN8 352 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 FAM120BQ96EK7 910 aaKnown RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 TMEM120AQ9BXJ8 343 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 UBE2ZQ9H832 354 aaPredicted RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 MRPS30Q9NP92 439 aaKnown RBP10.08□□□□□ -0.8
USP54-201ENST00000339859 OBP2AQ9NY56 170 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 A0A0D9SEW6 157 aa10.08□□□□□ -0.8
USP54-201ENST00000339859 HNRNPRO43390 633 aaKnown RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms