RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ABRQ12979 859 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 ADGRE1Q14246 886 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 PON3Q15166 354 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 COLGALT2Q8IYK4 626 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 MARCH10Q8NA82 808 aaPredicted RBP14.21□□□□□ -0.13
COL7A1-201ENST00000328333 THAP6Q8TBB0 222 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 CNDP2Q96KP4 475 aaKnown RBP14.21□□□□□ -0.13
COL7A1-201ENST00000328333 ATXN3LQ9H3M9 355 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 ZFP14Q9HCL3 533 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 ALOX15BO15296 676 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 RORAP35398 523 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 LAMTOR4Q0VGL1 99 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 XKR6Q5GH73 641 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 ALYREFQ86V81 257 aaKnown RBP14.21□□□□□ -0.13
COL7A1-201ENST00000328333 MRPL9Q9BYD2 267 aaKnown RBP14.21□□□□□ -0.13
COL7A1-201ENST00000328333 OR12D3Q9UGF7 316 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 TDRKHQ9Y2W6 561 aaKnown RBP14.21□□□□□ -0.13
COL7A1-201ENST00000328333 TIPRLO75663 272 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 GJB6O95452 261 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 PPP4CP60510 307 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 USP30Q70CQ3 517 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 NEK7Q8TDX7 302 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 CDADC1Q9BWV3 514 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 FBXO9Q9UK97 447 aaPredicted RBP14.21□□□□□ -0.13
COL7A1-201ENST00000328333 FSHRP23945 695 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 OAZ1P54368 228 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 CTXN3Q4LDR2 81 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 KCTD8Q6ZWB6 473 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 CIB1Q99828 191 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 SETD4Q9NVD3 440 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 AXIN2Q9Y2T1 843 aa14.21□□□□□ -0.13
COL7A1-201ENST00000328333 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.21□□□□□ -0.14
COL7A1-201ENST00000328333 GNG2P59768 71 aa14.21□□□□□ -0.14
COL7A1-201ENST00000328333 SATL1Q86VE3 508 aa14.21□□□□□ -0.14
COL7A1-201ENST00000328333 TCEAL3Q969E4 200 aa14.21□□□□□ -0.14
COL7A1-201ENST00000328333 PRAMEF22A3QJZ6 481 aa14.21□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF99A8MXY4 864 aaPredicted RBP14.21□□□□□ -0.14
COL7A1-201ENST00000328333 TOB1P50616 345 aaPredicted RBP14.21□□□□□ -0.14
COL7A1-201ENST00000328333 HAGHLQ6PII5 290 aaPredicted RBP14.21□□□□□ -0.14
COL7A1-201ENST00000328333 PPCDCQ96CD2 204 aa14.21□□□□□ -0.14
COL7A1-201ENST00000328333 TMEM94Q12767 1356 aa14.21□□□□□ -0.14
COL7A1-201ENST00000328333 USP41Q3LFD5 358 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ABCA11PQ4W5N1 156 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 GCNT6Q5T4J0 391 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 AGXT2Q9BYV1 514 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ATP13A1Q9HD20 1204 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 HPF1Q9NWY4 346 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 NR2E1Q9Y466 385 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 UGT2B4P06133 528 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 CHSY3Q70JA7 882 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 IQCKQ8N0W5 287 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF70Q9UC06 446 aaPredicted RBP14.2□□□□□ -0.14
COL7A1-201ENST00000328333 GLS2Q9UI32 602 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 DIP2AQ14689 1571 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 VWDEQ8N2E2 1590 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ADGRB2O60241 1585 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 CYP3A7-CYP3A51PA0A087WV96 503 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 CYP3A7P24462 503 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 MAPK3P27361 379 aaPredicted RBP14.2□□□□□ -0.14
COL7A1-201ENST00000328333 PABPC1LQ4VXU2 614 aaKnown RBP14.2□□□□□ -0.14
COL7A1-201ENST00000328333 DCST1Q5T197 706 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 APTXQ7Z2E3 356 aaKnown RBP14.2□□□□□ -0.14
COL7A1-201ENST00000328333 CUZD1Q86UP6 607 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ARMC10Q8N2F6 343 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ANKRD52Q8NB46 1076 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 SALL1Q9NSC2 1324 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 GPR75-ASB3A0A0A6YYF3 556 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 PSMB4P28070 264 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 SLC7A1P30825 629 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 GNPDA1P46926 289 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 AMHR2Q16671 573 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 KCTD4Q8WVF5 259 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 SLC44A1Q8WWI5 657 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF350Q9GZX5 532 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 PCDHGC3Q9UN70 934 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 USP31Q70CQ4 1352 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 MAP3K6O95382 1288 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 RAB5BP61020 215 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 LCP2Q13094 533 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 PNLDC1Q8NA58 520 aaKnown RBP14.2□□□□□ -0.14
COL7A1-201ENST00000328333 LGR4Q9BXB1 951 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 RGS17Q9UGC6 210 aaPredicted RBP14.2□□□□□ -0.14
COL7A1-201ENST00000328333 TIGD2Q4W5G0 525 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 SNX20Q7Z614 316 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 EPS8L1Q8TE68 723 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 NXPE2Q96DL1 559 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ZNRF3Q9ULT6 936 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 I3L521 148 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 FOSL1P15407 271 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ZNF45Q02386 682 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 IQCCQ4KMZ1 466 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 C4orf46Q504U0 113 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 ADGRG2Q8IZP9 1017 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 RNF31Q96EP0 1072 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 TRPV2Q9Y5S1 764 aa14.2□□□□□ -0.14
COL7A1-201ENST00000328333 FAM237AA0A1B0GTK4 181 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 TRUB2O95900 331 aaKnown RBP14.19□□□□□ -0.14
COL7A1-201ENST00000328333 SLC9A9Q8IVB4 645 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 BRSK2Q8IWQ3 736 aa14.19□□□□□ -0.14
COL7A1-201ENST00000328333 DRAXINQ8NBI3 349 aaPredicted RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms