RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FAM124BQ9H5Z6 455 aaPredicted RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 ARHGEF4Q9NR80 690 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.29■□□□□ 0.04
SHH-201ENST00000297261 ZNHIT2Q9UHR6 403 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 MAGEL2Q9UJ55 1249 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 SSC5DA1L4H1 1573 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 H3BMM5 538 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 RFPL1O75677 317 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CYP7B1O75881 506 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CHI3L1P36222 383 aaPredicted RBP15.29■□□□□ 0.04
SHH-201ENST00000297261 SLC25A52Q3SY17 297 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 CAMKK1Q8N5S9 505 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 DMRTB1Q96MA1 342 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 FBXO44Q9H4M3 255 aa15.29■□□□□ 0.04
SHH-201ENST00000297261 RBM47A0AV96 593 aaKnown RBP15.28■□□□□ 0.04
SHH-201ENST00000297261 PDE9AO76083 593 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 OR4Q2P0C623 313 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 HARS2P49590 506 aaKnown RBP15.28■□□□□ 0.04
SHH-201ENST00000297261 NDUFV1P49821 464 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 WNT3AP56704 352 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 SRP54P61011 504 aaKnown RBP15.28■□□□□ 0.04
SHH-201ENST00000297261 RHDQ02161 417 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 CMPK2Q5EBM0 449 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 CST9Q5W186 159 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 ESRP1Q6NXG1 681 aaKnown RBP15.28■□□□□ 0.04
SHH-201ENST00000297261 C17orf99Q6UX52 265 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 AHSA2Q719I0 299 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 CCDC185Q8N715 623 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 PCED1BQ96HM7 432 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 RAPGEFL1Q9UHV5 662 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 GMEB1Q9Y692 573 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 RGS14O43566 566 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 COL6A2P12110 1019 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 KCNJ11Q14654 390 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 MBLAC2Q68D91 279 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 IFNLR1Q8IU57 520 aaPredicted RBP15.28■□□□□ 0.04
SHH-201ENST00000297261 ELMOD1Q8N336 334 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 HEXDCQ8WVB3 486 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 HNRNPABQ99729 332 aaKnown RBP15.28■□□□□ 0.04
SHH-201ENST00000297261 CATSPERZQ9NTU4 200 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 MYADML2A6NDP7 307 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 FAM159BA6NKW6 160 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 NT5C1B-RDH14C9J2C7 533 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 NOBOXO60393 691 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 RSL1D1O76021 490 aaKnown RBP15.28■□□□□ 0.04
SHH-201ENST00000297261 OR1E1P30953 314 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 MORN1Q5T089 497 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 GPRIN3Q6ZVF9 776 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 ADGRG6Q86SQ4 1221 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 FAM45AQ8TCE6 357 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 MCOLN3Q8TDD5 553 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 TWIST2Q8WVJ9 160 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 DEFB118Q96PH6 123 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 MARCH7Q9H992 704 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 ZDHHC2Q9UIJ5 367 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 ST14Q9Y5Y6 855 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 PSAT1Q9Y617 370 aa15.28■□□□□ 0.04
SHH-201ENST00000297261 SF3B1O75533 1304 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHH-201ENST00000297261 MOXD2PA6NHM9 499 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 NDUFS2O75306 463 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 GPR32O75388 356 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 SORBS2O94875 1100 aaKnown RBP15.27■□□□□ 0.04
SHH-201ENST00000297261 AP2A1O95782 977 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 ADRA1BP35368 520 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 ACLYP53396 1101 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 RFX4Q33E94 735 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 SLC24A5Q71RS6 500 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 TMEM174Q8WUU8 243 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 TMEM40Q8WWA1 233 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 MOCOSQ96EN8 888 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 FOPNLQ96NB1 174 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 ADGRE3Q9BY15 652 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 ADPRHL2Q9NX46 363 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 CRNNQ9UBG3 495 aaPredicted RBP15.27■□□□□ 0.04
SHH-201ENST00000297261 BCKDKO14874 412 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 MYL12BO14950 172 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 YWHAQP27348 245 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 HOXA11P31270 313 aaPredicted RBP15.27■□□□□ 0.04
SHH-201ENST00000297261 DNASE1L3Q13609 305 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 TSNQ15631 228 aaKnown RBP15.27■□□□□ 0.04
SHH-201ENST00000297261 DPY19L2P1Q6NXN4 242 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 STRADAQ7RTN6 431 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 GLT6D1Q7Z4J2 308 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 MARVELD2Q8N4S9 558 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 FBXL20Q96IG2 436 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 OPTCQ9UBM4 332 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 MFHAS1Q9Y4C4 1052 aa15.27■□□□□ 0.04
SHH-201ENST00000297261 BCAS2O75934 225 aaPredicted RBP15.27■□□□□ 0.03
SHH-201ENST00000297261 INHAP05111 366 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 CCR10P46092 362 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 TBX4P57082 545 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 TCEAL1Q15170 157 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 STXBP5Q5T5C0 1151 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 CASP12Q6UXS9 341 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 PROSER1Q86XN7 944 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 ISOC1Q96CN7 298 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 PHF24Q9UPV7 400 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.27■□□□□ 0.03
SHH-201ENST00000297261 F5H5T6 163 aa15.27■□□□□ 0.03
SHH-201ENST00000297261 FBP2O00757 339 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms