RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 YBEYP58557 167 aaPredicted RBP17.2■□□□□ 0.34
SHANK1-201ENST00000293441 MINDY4Q4G0A6 757 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 GK5Q6ZS86 529 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 SLC9A6Q92581 669 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 CNOT6Q9ULM6 557 aaKnown RBP17.2■□□□□ 0.34
SHANK1-201ENST00000293441 MRPS17Q9Y2R5 130 aaKnown RBP17.2■□□□□ 0.34
SHANK1-201ENST00000293441 A0A1W2PQ67 120 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.2■□□□□ 0.34
SHANK1-201ENST00000293441 WWP2O00308 870 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 DDX3YO15523 660 aaKnown RBP17.2■□□□□ 0.34
SHANK1-201ENST00000293441 BNC1Q01954 994 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.2■□□□□ 0.34
SHANK1-201ENST00000293441 CNPPD1Q9BV87 410 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 C11orf49Q9H6J7 331 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 ABCB8Q9NUT2 735 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 PCDHGC3Q9UN70 934 aa17.2■□□□□ 0.34
SHANK1-201ENST00000293441 C3P01024 1663 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 LRIG2O94898 1065 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 SPATA19Q7Z5L4 167 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 HDDC3Q8N4P3 179 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 EXOSC8Q96B26 276 aaKnown RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 LPIN3Q9BQK8 851 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 NEURL4Q96JN8 1562 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 SNPHO15079 494 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 ATXN7L2Q5T6C5 722 aaPredicted RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 AMIGO2Q86SJ2 522 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 HID1Q8IV36 788 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 SLC43A3Q8NBI5 491 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 EEF1AKMT1Q8WVE0 214 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 SLCO1B3Q9NPD5 702 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 ERGIC3Q9Y282 383 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 R3HDM2Q9Y2K5 976 aaKnown RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 TIMM22Q9Y584 194 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 SYN1P17600 705 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 TCEA1P23193 301 aaKnown RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 LGALS3BPQ08380 585 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 IRGCQ6NXR0 463 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 MSANTD2Q6P1R3 559 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 JSRP1Q96MG2 331 aaPredicted RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 RHOBTB2Q9BYZ6 727 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 ADGRE2Q9UHX3 823 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 UGT2B17O75795 530 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 UGT1A5P35504 534 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 ELF3P78545 371 aaPredicted RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 SPIRE1Q08AE8 756 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 TIGD2Q4W5G0 525 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 PARP8Q8N3A8 854 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 ZCCHC10Q8TBK6 192 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 DNASE1L2Q92874 299 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 MAGEH1Q9H213 219 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 FPGTO14772 594 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 ECDO95905 644 aaPredicted RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 C2P06681 752 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 RPIAP49247 311 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 FPGSQ05932 587 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 ILF3Q12906 894 aaKnown RBP eCLIP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 TTC23Q5W5X9 447 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 TMC5Q6UXY8 1006 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 NEK7Q8TDX7 302 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 PSMG2Q969U7 264 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 SLC38A3Q99624 504 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 PTPN18Q99952 460 aa17.19■□□□□ 0.34
SHANK1-201ENST00000293441 NOL11Q9H8H0 719 aaKnown RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 POLMQ9NP87 494 aaPredicted RBP17.19■□□□□ 0.34
SHANK1-201ENST00000293441 AP2A1O95782 977 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 GOT2P00505 430 aaKnown RBP17.18■□□□□ 0.34
SHANK1-201ENST00000293441 PPIBP23284 216 aaKnown RBP17.18■□□□□ 0.34
SHANK1-201ENST00000293441 HSPA7P48741 367 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 LSM3P62310 102 aaKnown RBP17.18■□□□□ 0.34
SHANK1-201ENST00000293441 ZNF662Q6ZS27 426 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 DHDDSQ86SQ9 333 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 SERPINA9Q86WD7 417 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 C5orf34Q96MH7 638 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 DHRS12A0PJE2 317 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 OR1F1O43749 312 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 PBX3P40426 434 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 PSMD4P55036 377 aaKnown RBP17.18■□□□□ 0.34
SHANK1-201ENST00000293441 ATP13A5Q4VNC0 1218 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 PTCHD4Q6ZW05 846 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 C11orf84Q9BUA3 381 aaPredicted RBP17.18■□□□□ 0.34
SHANK1-201ENST00000293441 MATN3O15232 486 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 AOC2O75106 756 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 MASP1P48740 699 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 FSTL1Q12841 308 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 TMEM220Q6QAJ8 160 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 SLC26A9Q7LBE3 791 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 ARHGEF4Q9NR80 690 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 CLDN9O95484 217 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 HTR7P34969 479 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 CDKN2BP42772 138 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 XAGE5Q8WWM1 108 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 LCN9Q8WX39 176 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 COQ7Q99807 217 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 DIABLOQ9NR28 239 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 ASNA1O43681 348 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 SIN3BO75182 1162 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 IPO13O94829 963 aaKnown RBP17.18■□□□□ 0.34
SHANK1-201ENST00000293441 PPIDQ08752 370 aaKnown RBP17.18■□□□□ 0.34
SHANK1-201ENST00000293441 UBXN11Q5T124 520 aa17.18■□□□□ 0.34
SHANK1-201ENST00000293441 ALKBH4Q9NXW9 302 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms