RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 C8orf82Q6P1X6 216 aaPredicted RBP19.92■□□□□ 0.78
VPS53-201ENST00000291074 SCIMPQ6UWF3 145 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 TAS2R42Q7RTR8 314 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 TMEM150AQ86TG1 271 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 EID2BQ96D98 161 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 PCDHGB4Q9UN71 923 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 PCDHGB5Q9Y5G0 923 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 ALPIP09923 528 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 CHRM3P20309 590 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 PSMA3P25788 255 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 RHOAP61586 193 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 YBX1P67809 324 aaKnown RBP19.92■□□□□ 0.78
VPS53-201ENST00000291074 TICAM1Q8IUC6 712 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 GALNT4Q8N4A0 578 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 TMEM102Q8N9M5 508 aaPredicted RBP19.92■□□□□ 0.78
VPS53-201ENST00000291074 CEP295NLQ96MC4 621 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 BTBD9Q96Q07 612 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 TM6SF2Q9BZW4 377 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 TMEM181Q9P2C4 612 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 PCDH10Q9P2E7 1040 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 EPS15L1Q9UBC2 864 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 CD300AQ9UGN4 299 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 ZNF225Q9UK10 706 aa19.92■□□□□ 0.78
VPS53-201ENST00000291074 COL4A6Q14031 1691 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 EME2A4GXA9 379 aaPredicted RBP19.91■□□□□ 0.78
VPS53-201ENST00000291074 CRCPO75575 148 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 PYGLP06737 847 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 TTPAP49638 278 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 DIO3P55073 304 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 SYVN1Q86TM6 617 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 FEM1AQ9BSK4 669 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 SEMA6AQ9H2E6 1030 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 MAP10Q9P2G4 905 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 VPS51Q9UID3 782 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 KIF3CO14782 793 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 CSKP41240 450 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 NKAPQ8N5F7 415 aaKnown RBP19.91■□□□□ 0.78
VPS53-201ENST00000291074 LAMA3Q16787 3333 aa19.91■□□□□ 0.78
VPS53-201ENST00000291074 PRRG1O14668 218 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 CSPG5O95196 566 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 UGT2A3Q6UWM9 527 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 LYSMD3Q7Z3D4 306 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 DNAJB7Q7Z6W7 309 aaPredicted RBP19.9■□□□□ 0.78
VPS53-201ENST00000291074 MIER2Q8N344 545 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 TRIM8Q9BZR9 551 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 GPBP1L1Q9HC44 474 aaPredicted RBP19.9■□□□□ 0.78
VPS53-201ENST00000291074 ZNF334Q9HCZ1 680 aaPredicted RBP19.9■□□□□ 0.78
VPS53-201ENST00000291074 EIF2B4Q9UI10 523 aaKnown RBP19.9■□□□□ 0.78
VPS53-201ENST00000291074 PCTPQ9UKL6 214 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 OBSL1O75147 1896 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 ENO4A6NNW6 628 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 SYCE1LA8MT33 242 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 CXCL10P02778 98 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 C8BP07358 591 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 LBPP18428 481 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 CES1P23141 567 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 CAPRIN1Q14444 709 aaKnown RBP19.9■□□□□ 0.78
VPS53-201ENST00000291074 APLFQ8IW19 511 aaPredicted RBP19.9■□□□□ 0.78
VPS53-201ENST00000291074 ARL14EPQ8N8R7 260 aaPredicted RBP19.9■□□□□ 0.78
VPS53-201ENST00000291074 ADAMTS19Q8TE59 1207 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 DEFB118Q96PH6 123 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 GBP5Q96PP8 586 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 ACOX2Q99424 681 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 ZNF711Q9Y462 761 aa19.9■□□□□ 0.78
VPS53-201ENST00000291074 C15orf38-AP3S2A0A0A6YYH1 394 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 E5RI56 91 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 SOD2P04179 222 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 CA5AP35218 305 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 GRIA2P42262 883 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 GK3PQ14409 553 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 VEPH1Q14D04 833 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 RBBP7Q16576 425 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 TXNDC8Q6A555 127 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 ARPINQ7Z6K5 226 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 HERC6Q8IVU3 1022 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 FAM110BQ8TC76 370 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 SLCO4A1Q96BD0 722 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 PLEKHG4BQ96PX9 1271 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 CFHR5Q9BXR6 569 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 UBAP1Q9NZ09 502 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 AP4S1Q9Y587 144 aa19.89■□□□□ 0.78
VPS53-201ENST00000291074 NME4O00746 187 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 SPATA31D3P0C874 917 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 GKP32189 559 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 IL2P60568 153 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 CDKL1Q00532 357 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 SAMD4BQ5PRF9 694 aaKnown RBP19.89■□□□□ 0.77
VPS53-201ENST00000291074 HACD2Q6Y1H2 254 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 SPATA31D4Q6ZUB0 917 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 CAMK1DQ8IU85 385 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 ADCY4Q8NFM4 1077 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 ZNF483Q8TF39 744 aaPredicted RBP19.89■□□□□ 0.77
VPS53-201ENST00000291074 ZNF296Q8WUU4 475 aaPredicted RBP19.89■□□□□ 0.77
VPS53-201ENST00000291074 LRTOMTQ8WZ04 291 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 TRMT2BQ96GJ1 504 aaKnown RBP19.89■□□□□ 0.77
VPS53-201ENST00000291074 HGH1Q9BTY7 390 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 GPR63Q9BZJ6 419 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 CD274Q9NZQ7 290 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 IL17CQ9P0M4 197 aa19.89■□□□□ 0.77
VPS53-201ENST00000291074 OR51B4Q9Y5P0 310 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms