RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 S1PR5Q9H228 398 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 NCKIPSDQ9NZQ3 722 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 ZDHHC2Q9UIJ5 367 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 PRDM4Q9UKN5 801 aa16.37■□□□□ 0.21
USP4-201ENST00000265560 RPL26L1Q9UNX3 145 aaKnown RBP16.37■□□□□ 0.21
USP4-201ENST00000265560 GOLGA4Q13439 2230 aaKnown RBP16.37■□□□□ 0.21
USP4-201ENST00000265560 NPEPPSL1A6NEC2 478 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 A8MT66 165 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 DIAPH2O60879 1101 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 JUNP05412 331 aaKnown RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 ALDH18A1P54886 795 aaKnown RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 ADGRE1Q14246 886 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 PFKFB4Q16877 469 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 SPATS2Q86XZ4 545 aaKnown RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 ZNF641Q96N77 438 aaPredicted RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 NMUR2Q9GZQ4 415 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 TNFRSF12AQ9NP84 129 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 H7C0S8 307 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 BTN3A1O00481 513 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 WISP3O95389 354 aaPredicted RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 ITGALP20701 1170 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 SPAM1P38567 509 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 IL12RB1P42701 662 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 SETDB1Q15047 1291 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 CFAP157Q5JU67 520 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 EGFLAMQ63HQ2 1017 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 PARS2Q7L3T8 475 aaKnown RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 SPATA16Q9BXB7 569 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 CLPBQ9H078 707 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 HAO1Q9UJM8 370 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 SCN8AQ9UQD0 1980 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 MYO1CO00159 1063 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 PRMT5O14744 637 aaPredicted RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 EPHX1P07099 455 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 GRK2P25098 689 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 POLD2P49005 469 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 CORO7P57737 925 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 TSNAXIP1Q2TAA8 658 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 SNX20Q7Z614 316 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 GALNT7Q86SF2 657 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 LSMEM2Q8N112 164 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 WDR55Q9H6Y2 383 aaPredicted RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 TRMT6Q9UJA5 497 aaKnown RBP16.36■□□□□ 0.21
USP4-201ENST00000265560 ZFP69BQ9UJL9 534 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 CAPN7Q9Y6W3 813 aa16.36■□□□□ 0.21
USP4-201ENST00000265560 ACAP2Q15057 778 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 CCDC85BQ15834 202 aaPredicted RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 C9orf64Q5T6V5 341 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 PIWIL4Q7Z3Z4 852 aaKnown RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 ZNF557Q8N988 423 aaPredicted RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 OR6Y1Q8NGX8 325 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 CD200R1Q8TD46 325 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 LINGO1Q96FE5 620 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 TCF12Q99081 682 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 KDM4CQ9H3R0 1056 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 SLC27A6Q9Y2P4 619 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 SDK1Q7Z5N4 2213 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 KAT7O95251 611 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 SLC25A14O95258 325 aaPredicted RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 FCHO2Q0JRZ9 810 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 TMEM184AQ6ZMB5 413 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 CCDC91Q7Z6B0 441 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 WDR75Q8IWA0 830 aaKnown RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 PELI3Q8N2H9 469 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 NSUN5Q96P11 429 aaKnown RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 MCCC1Q96RQ3 725 aaPredicted RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 TTYH1Q9H313 450 aaPredicted RBP16.35■□□□□ 0.21
USP4-201ENST00000265560 TMPRSS11EQ9UL52 423 aa16.35■□□□□ 0.21
USP4-201ENST00000265560 VPS26AO75436 327 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 SUPT7LO94864 414 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 TGDSO95455 350 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 PTGER3P43115 390 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 SPINT3P49223 89 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 POLR2LP62875 67 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 UBAP2LQ14157 1087 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 PDCD2Q16342 344 aaPredicted RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 ZNF805Q5CZA5 627 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 PIP4K2CQ8TBX8 421 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 NUF2Q9BZD4 464 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 APPL1Q9UKG1 709 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 APOA4P06727 396 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 PSMA3P25788 255 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 SLC9B1Q4ZJI4 515 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 ARMC3Q5W041 872 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 CLNKQ7Z7G1 428 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 BEND7Q8N7W2 519 aaPredicted RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 DCBLD1Q8N8Z6 715 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 FUBP1Q96AE4 644 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 TRMT61BQ9BVS5 477 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 COG4Q9H9E3 785 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 UPK3BL1B0FP48 263 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 SUPT3HB4E1H0 165 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 UPK3BL2E5RIL1 263 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 INPP4BO15327 924 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 SUPT3HO75486 399 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 IPO13O94829 963 aaKnown RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 ATP5F1P24539 256 aaPredicted RBP16.34■□□□□ 0.21
USP4-201ENST00000265560 ACRV1P26436 265 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 CPA2P48052 419 aa16.34■□□□□ 0.21
USP4-201ENST00000265560 AGTR2P50052 363 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms