RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 PPM1AP35813 382 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 MTHFRP42898 656 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 ACTR3P61158 418 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 CYP4F2P78329 520 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 CYP4F3Q08477 520 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 MED22Q15528 200 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 ZNHIT3Q15649 155 aaPredicted RBP10.7□□□□□ -0.7
CD44-201ENST00000263398 GPAT3Q53EU6 434 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 GALNT18Q6P9A2 607 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 IKBIPQ70UQ0 350 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 OR6K2Q8NGY2 324 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 CLHC1Q8NHS4 586 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 ZNF516Q92618 1163 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 ADI1Q9BV57 179 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 TOR4AQ9NXH8 423 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 MRPL39Q9NYK5 338 aaKnown RBP10.7□□□□□ -0.7
CD44-201ENST00000263398 NUDT4Q9NZJ9 180 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 SSR3Q9UNL2 185 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 MFHAS1Q9Y4C4 1052 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 NT5C1B-RDH14C9J2C7 533 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 CYP4B1P13584 511 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 IL12AP29459 219 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 ASMTP46597 345 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 GNA12Q03113 381 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 SULT2A1Q06520 285 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 ZSWIM7Q19AV6 140 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 REP15Q6BDI9 236 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 IZUMO1Q8IYV9 350 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 OMA1Q96E52 524 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 VMP1Q96GC9 406 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 ZNF317Q96PQ6 595 aaPredicted RBP10.7□□□□□ -0.7
CD44-201ENST00000263398 RAB23Q9ULC3 237 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 POLR1DQ9Y2S0 133 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 WASF2Q9Y6W5 498 aa10.7□□□□□ -0.7
CD44-201ENST00000263398 KCPQ6ZWJ8 1503 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 MYBPHLA2RUH7 354 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 OR6A2O95222 327 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 IL1BP01584 269 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 SLC35G4P0C7Q5 338 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 PRKAR2AP13861 404 aaKnown RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 MAPKAPK2P49137 400 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 NDST2P52849 883 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 CACNG1Q06432 222 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 MTAPQ13126 283 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 LPIN1Q14693 890 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 CA9Q16790 459 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 NDUFAF6Q330K2 333 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 POM121L1PQ3SYA9 428 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 CAPN13Q6MZZ7 669 aaPredicted RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 COLGALT2Q8IYK4 626 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 POMGNT2Q8NAT1 580 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 C12orf42Q96LP6 360 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 GINS4Q9BRT9 223 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 AARSD1Q9BTE6 412 aaKnown RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 RHBGQ9H310 441 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 IFT80Q9P2H3 777 aaPredicted RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 OGDHLQ9ULD0 1010 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 ALOX5P09917 674 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 ELFN1P0C7U0 828 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 PRG2P13727 222 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 GABRR2P28476 465 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 TPP2P29144 1249 aaPredicted RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 SCNN1AP37088 669 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 GLUD2P49448 558 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 NDUFV1P49821 464 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 CLCNKBP51801 687 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 CCL23P55773 120 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 RFTN2Q52LD8 501 aaPredicted RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 DENND6AQ8IWF6 608 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 ARL10Q8N8L6 244 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 SMYD1Q8NB12 490 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 DNAJB4Q9UDY4 337 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 A0A1W2PQ67 120 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 URADA6NGE7 173 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 YJEFN3A6XGL0 299 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 TULP3O75386 442 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 ASGR1P07306 291 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 CTSKP43235 329 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 MAPK9P45984 424 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 SP3Q02447 781 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 SIM2Q14190 667 aaPredicted RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 PTCHD4Q6ZW05 846 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 AP3S1Q92572 193 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 AZIN2Q96A70 460 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 CMTM6Q9NX76 183 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 UBAP1Q9NZ09 502 aa10.69□□□□□ -0.7
CD44-201ENST00000263398 MRPS7Q9Y2R9 242 aaKnown RBP10.69□□□□□ -0.7
CD44-201ENST00000263398 A0A1B0GVM2 712 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 FAM149AA5PLN7 773 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 TCAF2A6NFQ2 919 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 H7C0S8 307 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 ACSL4O60488 711 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 SCELO95171 688 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 CLDN9O95484 217 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 ZBTB11O95625 1053 aaPredicted RBP10.68□□□□□ -0.7
CD44-201ENST00000263398 IGFBP5P24593 272 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 CORO1AP31146 461 aaKnown RBP10.68□□□□□ -0.7
CD44-201ENST00000263398 SPAM1P38567 509 aa10.68□□□□□ -0.7
CD44-201ENST00000263398 SRP54P61011 504 aaKnown RBP10.68□□□□□ -0.7
CD44-201ENST00000263398 SH3PXD2AQ5TCZ1 1133 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms